View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496-Insertion-10 (Length: 329)
Name: NF4496-Insertion-10
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496-Insertion-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 39631371 - 39631694
Alignment:
| Q |
7 |
agtttatttgttcctatgactgccaccagatatgaatgaattatgataccacgcaaatctttctgacttattcagaattaaaaagggagcaaaagatttc |
106 |
Q |
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| T |
39631371 |
agtttatttgttcctatgactgccaccagatatgaatgaattatgataccactcaaatctttctgacttattcagaattaaaaagggagcaaaagatttc |
39631470 |
T |
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| Q |
107 |
caaaaccttgacaatatatgcctttgaaacttgtttaactcataacttaaggtatgtacaactaatcttaatactataattgattaaa-tactgatggct |
205 |
Q |
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| T |
39631471 |
caaaaccttgacaatatatgcctttgaaacttgtttaactcataacttaaggtatgtacaactaatcttaatactataattgattaaattactgatggct |
39631570 |
T |
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| Q |
206 |
gatcatcttttgtttattgattaaacgtacgtggcatcttaatctccccgaaatgttaaagctcattcaaacaaattgttannnnnnnnaatatttctag |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39631571 |
gatcatcttttgtttattgattaaacgtacgtggcatcttaatctccccgaaatgttaaagctcattcaaacaaattgttattttttttaatatttctag |
39631670 |
T |
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| Q |
306 |
tggcataatattctgtgggcatga |
329 |
Q |
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| T |
39631671 |
tggcataatattctgtgggcatga |
39631694 |
T |
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