View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496-Insertion-13 (Length: 317)
Name: NF4496-Insertion-13
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496-Insertion-13 |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 27093432 - 27093122
Alignment:
| Q |
7 |
aattatatgtgtcggtgttagacacgatatgtgttcgacactaggacacacctaattcgatgagtgtccacttcatagctgttactgcattctaaaacct |
106 |
Q |
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||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27093432 |
aattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagtgtccacttcatagctgttactgcattctaaaacct |
27093333 |
T |
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| Q |
107 |
tgatttactagaatactattgatttgagcagttaaatagagtttattatgattttgttgcttgtagttcaaggacgttctcggcacaggagctatgaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27093332 |
tgatttactagaatactattgatttgagcagttaaatagagtttattatgattttgttgcttgtagttcaaggacgttctcggcacaggagctatgaaaa |
27093233 |
T |
|
| Q |
207 |
ctgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27093232 |
ctgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgact |
27093133 |
T |
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| Q |
307 |
ttattccgagg |
317 |
Q |
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|||||| |||| |
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| T |
27093132 |
ttattcagagg |
27093122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 27184869 - 27185179
Alignment:
| Q |
7 |
aattatatgtgtcggtgttagacacgatatgtgttcgacactaggacacacctaattcgatgagtgtccacttcatagctgttactgcattctaaaacct |
106 |
Q |
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| T |
27184869 |
aattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagtgtccacttcatagctgttactgcattctaaaacct |
27184968 |
T |
|
| Q |
107 |
tgatttactagaatactattgatttgagcagttaaatagagtttattatgattttgttgcttgtagttcaaggacgttctcggcacaggagctatgaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27184969 |
tgatttactagaatactattgatttgagcagttaaatagagtttattatgattttgttgcttgtagttcaaggacgttctcggcacaggagctatgaaaa |
27185068 |
T |
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| Q |
207 |
ctgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgact |
306 |
Q |
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| T |
27185069 |
ctgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgact |
27185168 |
T |
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| Q |
307 |
ttattccgagg |
317 |
Q |
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|||||| |||| |
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| T |
27185169 |
ttattcagagg |
27185179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 27229300 - 27229250
Alignment:
| Q |
26 |
agacacgatatgtgttcgacactaggacacacctaattcgatgagtgtcca |
76 |
Q |
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| T |
27229300 |
agacacgatacgtgttcgacactaggacacgcctaattcgaggaatgtcca |
27229250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 9906964 - 9907063
Alignment:
| Q |
218 |
gcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattccgagg |
317 |
Q |
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||||||||||| | || || || |||||||| ||||||||| |||| |||| |||||||| |||||||||||||||||||||||| || ||||| |||| |
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| T |
9906964 |
gcatttgatgaagttctaggaatagaagtggcatggaaccaaatcaagcttgatgatgtttttcattcaccagatcaacttcaacgtctctattcagagg |
9907063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 39268613 - 39268549
Alignment:
| Q |
11 |
atatgtgtcggtgttagacacgatatgtgttcgacactaggacacacctaattcgatgagtgtcc |
75 |
Q |
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||||||||||||||| ||||||| |||||| ||||||| |||||| |||||| ||| |||||||| |
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| T |
39268613 |
atatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtcc |
39268549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 26312809 - 26312875
Alignment:
| Q |
7 |
aattatatgtgtcggtgttagacacgatatgtgttcgacactaggacacacctaattcgatgagtgt |
73 |
Q |
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|||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||| ||| |||||| |
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| T |
26312809 |
aattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgt |
26312875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 44860379 - 44860439
Alignment:
| Q |
15 |
gtgtcggtgttagacacgatatgtgttcgacactaggacacacctaattcgatgagtgtcc |
75 |
Q |
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|||| |||||| ||||||| |||||| ||||| ||||||||||||||||| |||||||| |
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| T |
44860379 |
gtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtcc |
44860439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 2784596 - 2784652
Alignment:
| Q |
7 |
aattatatgtgtcggtgttagacacgatatgtgttcgacactaggacacacctaatt |
63 |
Q |
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|||||||||||||||||| |||||| | ||| | |||||||||||||||| ||||| |
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| T |
2784596 |
aattatatgtgtcggtgtcagacacaacgtgtatccgacactaggacacacttaatt |
2784652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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