View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4496-Insertion-2 (Length: 1010)
Name: NF4496-Insertion-2
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 755; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 7 - 956
Target Start/End: Original strand, 26136439 - 26137404
Alignment:
| Q |
7 |
atcccaaacattactcatagagcaattaactccgaaccatacccacccctagtaagcataatttcaaacaaaggtttcaaccgacggtaattaatttctt |
106 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26136439 |
atcccaagcattactcataaaacaattaactccgaaccatacccatccctagtaagcataatttcaaaccaaggtttcaaccgacggtaattaatttctt |
26136538 |
T |
|
| Q |
107 |
ttcttattttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtcnnnnnnnnnnctttctttcttccaggtgctataatagt------- |
199 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26136539 |
ttttttttttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtctttttttttc--ttctttcttccaggtgctataatagtatagagc |
26136636 |
T |
|
| Q |
200 |
----------cttatctttgctagcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatctttcaatttcaaacaa |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136637 |
aattaattgtcttatctttgttagcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatctttcaatttcaaacaa |
26136736 |
T |
|
| Q |
290 |
tctcttccacttcagtcttctccttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatcatcaccgattcttcct |
389 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136737 |
tctcttccacttcagtcttcttcttcttctctcacgatcacaaccaccacagtcacaaagcattcagctttgttttctgtcatcatcaccgattcttcct |
26136836 |
T |
|
| Q |
390 |
ctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcgcgcacataacatgtt |
489 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || |||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26136837 |
ctcaataaacaactagggttccatcttttcctcctctacttaatccgctgtgagcattctggcttttcctactctttcatattcgcgcacataacatgtt |
26136936 |
T |
|
| Q |
490 |
tgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaattttaactattcctatgtttttatgtaattagatgttggaataatata |
589 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136937 |
tgtgaaatgtcctctgtggattctctgtttagaataaccctgcaagctcaaattttaactatccttatgtttttatgtaattagatgttggaataatata |
26137036 |
T |
|
| Q |
590 |
tcatagtactaccctttgatactcagttttagaatatcttgctgataactcttttttcaaccaattgattgaaattcaaaaaacattgaataaaaggaac |
689 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26137037 |
tcatagtactaccctttgatgctcagttttagaatctcttgctgataactcttttttcaaccaattgattgaaattcaaaaaacattgaataaaaggaac |
26137136 |
T |
|
| Q |
690 |
tgcaagcaaacatgaaagcaaagtccaacaacaagtattcgaaatgtggtgccataaaatatcttttgtttgcaataaacgacgactgcaaactcggcat |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26137137 |
tgcaagcaaacatgaaagcaaagtccaacaacaagtattcgaaatgtggtgctataaaatatcttttgtttgcaataaacgacgactgcaaactcggcat |
26137236 |
T |
|
| Q |
790 |
atacattggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatatcatattgtttaccgcg |
889 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26137237 |
atacattggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatatcatactgtttaccgcg |
26137336 |
T |
|
| Q |
890 |
t-gattgagatatattggttattattgtatccaacgtatctgtctagtcaacgtttagtactgcaggt |
956 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
26137337 |
tagattgagatatattggttattattgtatccaacgtatctgtctcgtcaacgtttagtactggaggt |
26137404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 11 - 873
Target Start/End: Original strand, 25578135 - 25579013
Alignment:
| Q |
11 |
caaacattactcatagagcaattaactccgaaccatacccacccctagtaagcataatttcaaacaaaggtttcaaccgacggtaattaatttcttttct |
110 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25578135 |
caaacattgctcatagagcagataactccgaaccatacccacccctagtaagcataatttcaaaccaaggtttcaaccgacggtaattaatttcttttct |
25578234 |
T |
|
| Q |
111 |
tattttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtcnnnnnnnnnnctttctttcttccaggtgctataatagt----------- |
199 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
25578235 |
ttttttaacaaacagaagaaaataacgtaattaattgttgtttgttgggt-ttttttttttctttctttcttccaggtgcgataatagtatagagcaatt |
25578333 |
T |
|
| Q |
200 |
------cttatctttgctagcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatctttcaatttcaaacaatctc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
25578334 |
aattgtcttatctttgctagcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctttgttatcgttcaatttcaaacaatctc |
25578433 |
T |
|
| Q |
294 |
ttccacttcagtcttctccttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatcatcaccgattcttcctctca |
393 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25578434 |
ttccacttcagtcttcttcttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgttatcatcaccgattcttcctctca |
25578533 |
T |
|
| Q |
394 |
attaacaactagggtttcatctttttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcgcgcacataacatgtttgtg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578534 |
attaacaactagggtttcatctttttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcgcgcacataacatgtttgtg |
25578633 |
T |
|
| Q |
494 |
aaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaattttaactattcctatgtttttatgtaattagatgttggaataatatatcat |
593 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578634 |
aaatgtcctctgtggattctctgtttagaataaccctgcaagctcaaattttaactattcttatgtttttatgtaattagatgttggaataatatatcat |
25578733 |
T |
|
| Q |
594 |
agtactaccctttgatactcagttttagaatatcttgctgataactcttttttcaaccaattgattgaaattcaaaaaacattgaataaaaggaactgca |
693 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578734 |
agtactaccctttgatgctcagttttagaatatcttgctgataactcttttttcaaccaattgattgaaattcaaaaaacattgaataaaaggaactgca |
25578833 |
T |
|
| Q |
694 |
agcaaacatgaaagcaaagtccaacaacaagtattcgaaatgtggtgccataaaatatcttttgtttgcaataaacgacgactgcaaactcggcatatac |
793 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578834 |
agcaaacatgaaagcaaagtccaacaacatgtattcgaaatgtggtgctataaaatatcttttgtttgcaataaacgacgactgcaaactcggcatatac |
25578933 |
T |
|
| Q |
794 |
attggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatat |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578934 |
attggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatat |
25579013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 630
Target Start/End: Original strand, 33852628 - 33853255
Alignment:
| Q |
11 |
caaacattactcatagagcaattaactccgaaccatacccacccctagtaagcataatttcaaacaaaggtttcaaccgacggtaattaatttcttttct |
110 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33852628 |
caaacattagtcatagaacaattaaccccgaaccatacccacccctaataagcataattccaaactaaggtttcaacctacgataattaatttcttttct |
33852727 |
T |
|
| Q |
111 |
tattttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtcnnnnnnnnnn-ctttctttcttccaggtgctataatagt---------- |
199 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
33852728 |
ttttttaacaaagagaagaaaataatgtaattaattgttgtttgttgagtctttttttttttctttttttcttccaggtgctataatagtatagagcaat |
33852827 |
T |
|
| Q |
200 |
---cttatctttgctagcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatctttcaatttcaaacaatctcttc |
296 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33852828 |
tgtcttatctttgctagcttcaga-ctccacaagtaataagggtaaataagtaattacttagtaaccctttgttatctttcaatttcaaacaatctcttc |
33852926 |
T |
|
| Q |
297 |
cacttcagtcttctccttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaatt |
396 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33852927 |
cacttcagtcttct------tctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaatt |
33853020 |
T |
|
| Q |
397 |
aacaactagggtttcatcttt-ttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcgcgcacataacatgtttgtgaa |
495 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33853021 |
aacaattagggtttcatctttattcttctctactttattcgctgtgagcattcttactttttctactctttcatattcgcgcacataacatgtttgtgaa |
33853120 |
T |
|
| Q |
496 |
atgtcctctgtggattctctgtatagaataaccctgcaagctcaaattttaactattcctatgtttttatgtaattagatgttggaataatatatcatag |
595 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33853121 |
atgtcctctgtgaattctctgtatagaataaccctgcaagctcaaattttaactattcttatgtttttatgtaattagatgttggaataatatatcatag |
33853220 |
T |
|
| Q |
596 |
tactaccctttgatactcagttttagaatatcttg |
630 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
33853221 |
tactaccctttgatgctcagttttagaatatcttg |
33853255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 635 - 683
Target Start/End: Original strand, 5884747 - 5884795
Alignment:
| Q |
635 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
683 |
Q |
| |
|
||||||||||||||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
5884747 |
taactcttttttcaagcaattgatggaaatttagaaaacattgaataaa |
5884795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 806 - 860
Target Start/End: Original strand, 5885189 - 5885242
Alignment:
| Q |
806 |
aatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacattta |
860 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
5885189 |
aatgagttggaaaggtatttggaggat-gtcctgaagatgatgtttctacattta |
5885242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 683
Target Start/End: Original strand, 20484636 - 20484684
Alignment:
| Q |
635 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
683 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
20484636 |
taactcttttttcaagcaattgatggaaattcagaaaacattgaataaa |
20484684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 683
Target Start/End: Complemental strand, 27709200 - 27709152
Alignment:
| Q |
635 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
683 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
27709200 |
taactcttttttcaagcaattgatggaaattcagaaaacattgaataaa |
27709152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 806 - 860
Target Start/End: Complemental strand, 27708758 - 27708704
Alignment:
| Q |
806 |
aatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacattta |
860 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
27708758 |
aatgagttggaaaggtatctggaggatggtcctgaagatgatgtttctacattta |
27708704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 683
Target Start/End: Complemental strand, 17385537 - 17385489
Alignment:
| Q |
635 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
683 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
17385537 |
taactcttttttcaagcaattgatggaaattcagaaaacattgaataaa |
17385489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 806 - 860
Target Start/End: Complemental strand, 17385095 - 17385041
Alignment:
| Q |
806 |
aatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacattta |
860 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17385095 |
aatgagttggaaaggtatctggaggatggtcctgaagatgatgtttctacattta |
17385041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 683
Target Start/End: Complemental strand, 51511910 - 51511862
Alignment:
| Q |
635 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
683 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
51511910 |
taactcttttttcaagcaattgatggaaattcataaaacattgaataaa |
51511862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 808 - 849
Target Start/End: Complemental strand, 51511473 - 51511432
Alignment:
| Q |
808 |
tgagttggtaaggtatttggaggatggtcgtgaagatgatgt |
849 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
51511473 |
tgagttggaaaggtatctggaggatggtcctgaagatgatgt |
51511432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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