View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496-Insertion-3 (Length: 892)
Name: NF4496-Insertion-3
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496-Insertion-3 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 280 - 645
Target Start/End: Complemental strand, 2991024 - 2990659
Alignment:
| Q |
280 |
acttgaatctgatgatgttaactccttagctctttctgcttgattttcccaatttgtacgaaccaaaacaaacaacattgtaatcatacatgaaccttga |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2991024 |
acttgaatctgatgatgttaactccttagctctttctgcttgattttcccaatttgtacgaaccaaaacaaacaacattgtaatcatacatgaaccttga |
2990925 |
T |
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| Q |
380 |
gcagccataagaccaaaccacaaacctttgaaatcaaatccagcaaagaaactcaaccaaactgcaacaggcattcccacaagataaaaacaacctaaat |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2990924 |
gcagccataagaccaaaccacaaacctttgaaatcaaatccagcaaagaaactcaaccaaactgcaacaggcattcccacaagataaaaacaacctaaat |
2990825 |
T |
|
| Q |
480 |
ttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaa |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2990824 |
ttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaa |
2990725 |
T |
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| Q |
580 |
caccattgatgttaacgcaattatttgtggatcacttgtgaacatagtagcccaaatgtttctaac |
645 |
Q |
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| T |
2990724 |
caccattgatgttaacgcaattatttgtggatcacttgtgaacatagtagcccaaatgtttctaac |
2990659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 693 - 892
Target Start/End: Complemental strand, 2990611 - 2990411
Alignment:
| Q |
693 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaa-ctcaaagaagaaggaaa |
791 |
Q |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
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| Q |
792 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
891 |
Q |
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| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
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| Q |
892 |
c |
892 |
Q |
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| T |
2990411 |
c |
2990411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 2991295 - 2991053
Alignment:
| Q |
6 |
caagcatacatacatgctagtaaaatctttaaagttgacnnnnnnnnnncaaaatccttgtatagcctcaaatcttatcctcattaacttctcttaatta |
105 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2991295 |
caagcatacatgcatgctagtaaaatctttaaagttgacaaaaaa-----aaaatccttgtatagcctcaaatcttatcctcattaacttctcttaatta |
2991201 |
T |
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| Q |
106 |
gtttacaatataaaaattagtacaaaaatctagaaagaatgaatttgttcaccatttaaatcttgtaaaatatt--nnnnnnnnnnnnnnnttcaaacca |
203 |
Q |
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| T |
2991200 |
gtttacaatataaaaattagtacaaaaatctagaaagaatgaatttgttcaccatttaaatcttgtaaaatattaaaaaataaataaaaaattcaaacta |
2991101 |
T |
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| Q |
204 |
atgaatcagagcactcttttgtgccacatgaacttgaattgacaatca |
251 |
Q |
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| T |
2991100 |
atgaatcagagcactcttttgtgccacatgaacttgaattgacaatca |
2991053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 595
Target Start/End: Original strand, 28505456 - 28505530
Alignment:
| Q |
521 |
acaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaac |
595 |
Q |
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| T |
28505456 |
acaccacaaccggttgtttggggacaatttccgagctcgcaaagtccaacaattggtaacacaatagatgttaac |
28505530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 392 - 570
Target Start/End: Original strand, 45845341 - 45845519
Alignment:
| Q |
392 |
ccaaaccacaaacctttgaaatcaaatccagcaaagaaactcaaccaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgc |
491 |
Q |
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|||| ||||||||||| |||||||| ||| || | ||| ||||||| ||| || |||||||| |||| ||||||||||| ||||| |||||||| | |
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| T |
45845341 |
ccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaacaatgtaaaaacaaccaaaattgatatttgcac |
45845440 |
T |
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| Q |
492 |
ctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctat |
570 |
Q |
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||| ||| ||||| || ||||| || || || |||||| | ||||||||||||||||||||||| |||||||| ||||| |
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| T |
45845441 |
ctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccctat |
45845519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 892
Target Start/End: Original strand, 45845643 - 45845842
Alignment:
| Q |
694 |
gagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacac-caaactcaaagaagaaggaaaa |
792 |
Q |
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||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| ||||| | || || |||||| |
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| T |
45845643 |
gagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaaa |
45845742 |
T |
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| Q |
793 |
atgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtacc |
892 |
Q |
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| T |
45845743 |
atatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaatcatgatttcatacc |
45845842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 434 - 642
Target Start/End: Complemental strand, 24734 - 24526
Alignment:
| Q |
434 |
aaccaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacag |
533 |
Q |
| |
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|||||||| | ||| |||||||| || ||||||||||||||||| || ||||| || || | ||| ||||| || ||||| || | ||||||||| | | |
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| T |
24734 |
aaccaaaccgaaaccggcattccgacgagataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctg |
24635 |
T |
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| Q |
534 |
ttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttgtgaacatagtagccca |
633 |
Q |
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||||||| ||||| || || || ||||||| |||||||| || || |||||||||||||| ||||| |||| | || ||||||||||| ||||||| |
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| T |
24634 |
ttgtttgaggacagttacctagttcacataaacctataattggcaaaaccattgatgttaaagcaatgatttctttgtcttttgtgaacatactagccca |
24535 |
T |
|
| Q |
634 |
aatgtttct |
642 |
Q |
| |
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|||||||| |
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| T |
24534 |
catgtttct |
24526 |
T |
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