View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496-Insertion-5 (Length: 826)
Name: NF4496-Insertion-5
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Complemental strand, 41761309 - 41760725
Alignment:
| Q |
8 |
ataaaaatatccaaatctttctgtttctgtgcatgtatcaattcatgttaatcaagctattagtattgtttacttcaatatcatagtgatcaaatcaaat |
107 |
Q |
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| T |
41761309 |
ataaaaatatccaaatctttctgttcctgtgcatgtatcaattcatgttaatcaagttattagtattgtttacttcaatatcatagtgatcaaatcaaat |
41761210 |
T |
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| Q |
108 |
gcttagagtgtcaccaaaaaagtaatcaaatacttaagataattggctcaaaattacttggtaagttggttcatatccatgatgtgtgaactcagtcata |
207 |
Q |
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| T |
41761209 |
gcttagagtgtcaccaaaaaagtaatcaaatacttaagataattggctcaaaattacttggtaagttggttcatatccatgatgtgtgaactcagtcata |
41761110 |
T |
|
| Q |
208 |
agaatatgattttgttacctcaaatgaggtgagttatgattatcaatggcactctaattactaataatttttccttttcctannnnnnnnaaacaaaatt |
307 |
Q |
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| T |
41761109 |
agaatatgattttgttacctcaaatgaggtgagttatgattatcaatggcactctaattactaataatttttccttttcctattttttttaaacaaaatt |
41761010 |
T |
|
| Q |
308 |
tggttcataaaatatgcttagagtaaggctataacttaattaaaaagaaatttggcatggaaacttgctctttgttaatatctgaaatctttgcaaaatt |
407 |
Q |
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| T |
41761009 |
tggttcataaaatatgcttagagtaaggctataacttaattaaaaagaaatttggcatggaaacttgctctttgttaatatctgaaatctttgcaaaatt |
41760910 |
T |
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| Q |
408 |
taatggatgcatacatctaatttctaaaatacaagaaagaagcatgatcaaaagaaagaagatcat-ggttttgttgcttaaatcaaaccatgattaaat |
506 |
Q |
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| T |
41760909 |
taatggatgcatacatctaatttctaaaatac----aagaagcatgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaat |
41760814 |
T |
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| Q |
507 |
gccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
595 |
Q |
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| T |
41760813 |
gccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 662 - 826
Target Start/End: Complemental strand, 41760655 - 41760491
Alignment:
| Q |
662 |
attagaatgtaatcaatttccgacaatttatctccctcgtcatcatgtgcatcaaatagttcaacttcttctccttgttcttcgtctatgaaaattatat |
761 |
Q |
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| T |
41760655 |
attagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttctccttgttcttcgtctatgaaaattatat |
41760556 |
T |
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| Q |
762 |
tttcaatattttcttcgacatccgtagaacatgctttaatttctatttcttcctctgcttcggca |
826 |
Q |
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| T |
41760555 |
tttcaatattttcttcgacttctgtagaacatgctttaatttctatttcttcctctgcttcggca |
41760491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 349 - 593
Target Start/End: Complemental strand, 41795746 - 41795516
Alignment:
| Q |
349 |
aaaaagaaatttggcatggaaacttgctctttgttaatatctg-aaatctttgcaaaatttaatggatgcatacatctaatttctaaaatacaagaaaga |
447 |
Q |
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| T |
41795746 |
aaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaa-------aata--------- |
41795663 |
T |
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| Q |
448 |
agcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttc |
545 |
Q |
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| T |
41795662 |
-gcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaaccatgactaaatgccgtctagcatcaattcttagatcttctttcatctttc |
41795564 |
T |
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| Q |
546 |
taatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
593 |
Q |
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| T |
41795563 |
taatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 662 - 733
Target Start/End: Complemental strand, 41795456 - 41795385
Alignment:
| Q |
662 |
attagaatgtaatcaatttccgacaatttatctccctcgtcatcatgtgcatcaaatagttcaacttcttct |
733 |
Q |
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| T |
41795456 |
attagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttct |
41795385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
536 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
591 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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