View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496-Insertion-6 (Length: 635)
Name: NF4496-Insertion-6
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496-Insertion-6 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 8 - 635
Target Start/End: Original strand, 5565 - 6192
Alignment:
| Q |
8 |
gtagatagttcaaccatcttagcctacaactctttctgcatctgtttagaccttcaacaaaccaatgtttgatgnnnnnnnnnnnntaatcaactaagta |
107 |
Q |
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| T |
5565 |
gtagatagttcaaccatcttagcctacaactctttctgcatctgtttagaccttcaacaaaccaatgtttgatgaaaaaagaaaaataatcaactaagta |
5664 |
T |
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| Q |
108 |
agtatgttggttcaattgtgtaagaaccaattgcaaagattgaacaagtcagtcatttcatgatgatttcattttaatagtaaacccaaggtttttctag |
207 |
Q |
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| T |
5665 |
agtatgttggttcaattgtgtaagaaccaattgcaaagattgaacaagtaagtcatttcatgatgatttcattttaatagtaaacccaaggtttttctag |
5764 |
T |
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| Q |
208 |
tcaagaagagtatggaccaatctctcaaaataacggatccgttttaagaggtcgacagttgattttcaatnnnnnnntgttcttccatacatatttatca |
307 |
Q |
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| T |
5765 |
tcaagaagagtatggaccaatctctcaaaataacggatccgttttaagaggtcgacagttgattttcaataaaaaaatgttcttccatacatatttatca |
5864 |
T |
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| Q |
308 |
gagatggaacctcagatgacatacttcaagagtcggtcatttcatgatgatttcattttaatagtgaacccaaggttttcctagtcaagagtatggacca |
407 |
Q |
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| T |
5865 |
gagatggaacctcagatgacatacttcaagagtcggtcatttcatgatgatttcattttaatagtgaacccaaggttttcctagtcaagagcatggacca |
5964 |
T |
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| Q |
408 |
atctctcaaaataatatgatccgttttaagaggtcgacgattgatttttcaatnnnnnnntgttcttccatacatatttgtgagagatcgaacctcagat |
507 |
Q |
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| T |
5965 |
atctctcaaaataatatgatccgttttaagaggtcgacaattgatttttcaataaaaaaatgttcttccatacatatttgtgagagatcgaacctcagat |
6064 |
T |
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| Q |
508 |
gacatacttcaaagaagtaattaaatatccgttttagagaagacaaatagaaatatcaagaaaaaggaaaaataattgattaacttttaccagccaatag |
607 |
Q |
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| T |
6065 |
gacatacttcaaagaagtaattaaatatccgttttagagaagacaaatagaaatatcaagaaaaaggaaaaataattgattaacttttaccagccaatag |
6164 |
T |
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| Q |
608 |
tggaaccctatgccactttccttcacca |
635 |
Q |
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| T |
6165 |
tggaaccctatgccactttccttcacca |
6192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 41544317 - 41544284
Alignment:
| Q |
10 |
agatagttcaaccatcttagcctacaactctttc |
43 |
Q |
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| T |
41544317 |
agatagttcaaccatcttagcctgcaactctttc |
41544284 |
T |
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