View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4496-Insertion-7 (Length: 629)

Name: NF4496-Insertion-7
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4496-Insertion-7
NF4496-Insertion-7
[»] chr7 (2 HSPs)
chr7 (181-629)||(21929319-21929773)
chr7 (8-123)||(21929843-21929958)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 181 - 629
Target Start/End: Complemental strand, 21929773 - 21929319
Alignment:
Q  181 aactcttggatgcatgaaatatcttgatataaatcatggctttaaattacggtctgtaacttcaattacggttgtgatataaaagattttgaggtatcac 280  Q
    ||||||||||||||||  || |||| |  |||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  21929773 aactcttggatgcatggcatttcttcacttaaatcatggttttaaattgcggtcggtaaattcaattacggttgtgatataaaagattttgaggtatcac 21929674  T
Q  281 aaccacaa------ttttgaccgcaatttttgacaatataatagtttgtagcttaaccgcaactgcgactgcaatttaaaaccatgacttgaattatcat 374  Q
    || |||||      ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21929673 aatcacaaccgcaattttgaccgcaatttttgacaatataatagtatgtagcttaaccgcaactgcgactgcaatttaaaaccatgacttaaattatcat 21929574  T
Q  375 ctttggttgtggtttaaaattatcttttaaaataagtgatataaattcaaacaatgccacttggccattacacaaaaggattggattcattcaattgata 474  Q
    |||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21929573 ctttggttatggtctaagattatcttttaaaacaagtgatataaattcaaacaatgccacttggccattacacaaaaggattggattcattcaattgata 21929474  T
Q  475 catatatagggcatgatttgagtttttgagtaatgtaagtgatcataaaaaagttaaattatgcttattcttttctacttgatatgtgtttagggatcag 574  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21929473 catatatagggcatgatttgaatttttgagtaatgtaagtgatcataaaaaagttaaattatgcttattcttttctacttgatatgtgtttagggatcag 21929374  T
Q  575 tatctgcaaacacatcagaaggggaaataaattgcaaatggaatggttataataa 629  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21929373 tatctgcaaatacatcagaaggggaaataaattgcaaatggaatggttataataa 21929319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 21929958 - 21929843
Alignment:
Q  8 tgttggtagtacttttggttacccttttggatctaatgcacaagacttttccttttttaactcacctagcttgccttttgaggtaatcttctttttcaat 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21929958 tgttggtagcacttttggttacccttttggatctaatgcacaagacttttccttttttaactcacctagcttgctttttgaggtaatcttctttttcaat 21929859  T
Q  108 catgcatgtagaaaaa 123  Q
    ||||||||||||||||    
T  21929858 catgcatgtagaaaaa 21929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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