View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4496-Insertion-9 (Length: 493)

Name: NF4496-Insertion-9
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4496-Insertion-9
NF4496-Insertion-9
[»] chr5 (1 HSPs)
chr5 (8-493)||(39019623-39020108)


Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 493
Target Start/End: Complemental strand, 39020108 - 39019623
Alignment:
Q  8 acttttactctaattataacaaatacatcaaaaccatatagttgtggctactacaaggagattgccttcagattcaggagcttttgctgattgggcacca 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39020108 acttttactctaattataacaaatatatcaaaaccatatagttgtggctactacaaggagattgccttcagattcaggagcttttgctgattgggcacca 39020009  T
Q  108 actaattcatcaacagcccttcgtgctgctgctgctccagaagatctttctctcggtttcaatgcggctcccaccgccggaaacgccggagcttccaccg 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39020008 actaattcatcaacaacccttcgtgctgctgctgctccagaagatctttctctcggtttcaatgcggctcccaccgccggaaacgccggaccttccaccg 39019909  T
Q  208 gacccaccaccggattatataattcatctaggtccattaattatggacctgagatgggtatgtttgttgtagcaccttcttcttttcatcaccaccacca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39019908 gacccaccaccggattatataattcatctaggtccattaattatggacctgagatgggtatgtttgttgtagcaccttcttcttttcatcatcaccacca 39019809  T
Q  308 taataacaaccaccatgaagctcttatgtctgatcctcactctcttaaccccgccaccgctctcggtgtcggggttatacctttactcacagcttctcca 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39019808 taataacaaccaccatgaagctctcatgtctgatcctcactctcttaaccccgccaccgctctcggtgttggggttatacctttactcacagcttctcca 39019709  T
Q  408 tgtcttgaaaatgaaaacatgttaaacagtagaagaaaccaacaaggaattcagttttggcatgaacaacatcatcaacaacagca 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39019708 tgtcttgaaaatgaaaacatgttaaacagtagaagaaaccaacaaggaattcagttttggcatgaacaacatcatcaacaacagca 39019623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University