View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_high_1 (Length: 557)
Name: NF4496_high_1
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 147 - 514
Target Start/End: Original strand, 485385 - 485756
Alignment:
| Q |
147 |
ccttcgccacaccttcctttggtcccatta---tgcatgacaaatcacattcacatctctataaatacacataaattcttgccttattgaaccatcatca |
243 |
Q |
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| T |
485385 |
ccttcgccacaccttcctttggtcccattattatgcatgacaaatcacattcacatctctataaatacacataaattcttgccttattgatccatcatcc |
485484 |
T |
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| Q |
244 |
aaaccatatcacataacaaaacaagcaagttttaattcatttcatcaaatattcaaaaacataccaaatcaaatatcctcatattcattcatagcacatt |
343 |
Q |
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| T |
485485 |
aaaccatatcacataacaaaacaagcaagttttaattcatttcatcaaatattcaaaaacataccaaatcaaatatcctcatattcattcatagcacatt |
485584 |
T |
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| Q |
344 |
tttagcacacgaaatcccattattttctcattcaatattctcacaagtattacactctctcactcaccacaaaattctatatatatacaaacactagcac |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
485585 |
tttagcacacgaaatcccattattttctcattcaatattctcacaagtattacactctctcactcaccacaaaattctatatatacacaaacactagcac |
485684 |
T |
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| Q |
444 |
ctttcttctctcacgttaaca-tacacatacaccattccaactttctcattctcaattagaaaccctagcct |
514 |
Q |
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| T |
485685 |
ctttcttctctcacgttaacattacacatccatcattccaactttctcattctcaattagaaaccctagcct |
485756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 485268 - 485297
Alignment:
| Q |
30 |
ggaatgcatcaaaatatttttaaatgagcc |
59 |
Q |
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| T |
485268 |
ggaatgcatcaaaatatttttaaatgagcc |
485297 |
T |
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