View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_high_11 (Length: 249)
Name: NF4496_high_11
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41162493 - 41162260
Alignment:
| Q |
1 |
aaccccctaattgaacatgaaaaacgtgatcaacctaccaactaacctatgagctaaaaactcaaaaccccattaagtaatttcgatcaaagtaagagaa |
100 |
Q |
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| T |
41162493 |
aaccccctaattgaacatgaaaaacgtgatcaacctaccaactaacctatgagctaaaaactcaaaaccccattaagtaatttcgatcaaagtaagagaa |
41162394 |
T |
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| Q |
101 |
aatcaaatcaaaatcaaaactttactaatattataaaaatgatcataattgcgtagcaagatttgagagag-actacgtacctcgaaatggatctggtgg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41162393 |
aatcaaatcaaaatcaaaactttactaatattataaaaatgatcataattgcgtagcaagatttgagagagtactacgtacctcgaaatggatctggtgg |
41162294 |
T |
|
| Q |
200 |
aagatgagagtatacgaatggaatgagagatgag |
233 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41162293 |
aagatgagagtatacgaatggaatgagagatgag |
41162260 |
T |
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