View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_high_5 (Length: 366)
Name: NF4496_high_5
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 50974355 - 50974463
Alignment:
| Q |
11 |
cagagagatgcaaatgatctttgttggagctgttttcgttgaagcagttacaacgattacgaccacattttaaaggcggtgccaagttgtgtggttattc |
110 |
Q |
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| T |
50974355 |
cagagagatgcaaatggtctttgttggagctgttttccttgaagcagttacaacgattacgaccacgttttagaggcggtgtcaagttgtgtggttattc |
50974454 |
T |
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| Q |
111 |
caccatccc |
119 |
Q |
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| T |
50974455 |
caccatccc |
50974463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 50974578 - 50974711
Alignment:
| Q |
237 |
ggtggaggaaattaacatctctacgtaaactaagtcgttacataacatttgaattgc--------------------aactaattaaatttgcatatgca |
316 |
Q |
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| T |
50974578 |
ggtggaggaaattaacatctctacgtaaactaaatcgttacagaacatttgaattgcatagttgctattcccgataaaactaattaaatttgcatatgca |
50974677 |
T |
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| Q |
317 |
taagaaccacctctatagtacagaaataaaagat |
350 |
Q |
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| T |
50974678 |
taagcaccacctctatagtacataaataaaagat |
50974711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 26839263 - 26839368
Alignment:
| Q |
14 |
agagatgcaaatgatctttgttggagctgttttcgttgaagcagttacaacgattacgaccacattttaaaggcggtgccaagttgtgtggttattccac |
113 |
Q |
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| T |
26839263 |
agagatgcaaatggtctttgttggagctgtttttgttgaagcagttacagcgattacgaccacattttagaggcggtgtcaagttgtttggttattccac |
26839362 |
T |
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| Q |
114 |
catccc |
119 |
Q |
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| T |
26839363 |
catccc |
26839368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 26839556 - 26839610
Alignment:
| Q |
294 |
aactaattaaatttgcatatgcataagaaccacctctatagtacagaaataaaagat |
350 |
Q |
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|||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
26839556 |
aactaattaaatttgcatatgcatcagca--acctctatagtacagaaataaaagat |
26839610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 26839479 - 26839534
Alignment:
| Q |
237 |
ggtggaggaaattaacatctctacgtaaactaagtcgttacataacatttgaattg |
292 |
Q |
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|||||||||||| || ||| |||| |||||||||||||||| ||||||||||||| |
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| T |
26839479 |
ggtggaggaaatcaaaatccctacagaaactaagtcgttacagaacatttgaattg |
26839534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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