View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_high_7 (Length: 315)
Name: NF4496_high_7
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 32061939 - 32061650
Alignment:
| Q |
18 |
tcaacaaacttgttgattacaactgtatgatcaccgcgaagtttcttgctctcatcatttttagcctttacgcgtctatcagcagctttcatttcctgat |
117 |
Q |
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| T |
32061939 |
tcaacaaacttgttgattacaactgtatgatcaccgcgaagtttcttgctctcatcatttttagcctttacgcgtctatcagcagctttcatttcctgat |
32061840 |
T |
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| Q |
118 |
attgtataacattttattaaaactagctacactgaatggaccaagtaccaagaataacnnnnnnntgacaaaaacagcatagatggacacatgaaggaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32061839 |
attgtataacattttattaaaactagctacactgaatggaccaagtaccaagaataacaaataaatgacaaaaacagcatagatggacacatgaaggaaa |
32061740 |
T |
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| Q |
218 |
aaactagtcaatacctgaattttcttcttgcgcttcatgcgttgaagaaattgttcataagatttctgcagttcatccacaggttctgct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32061739 |
aaactagtcaatacctgaattttcttcttgcgcttcatgcgttgaagaaattgttcataagatttctgcagttcatccacaggctctgct |
32061650 |
T |
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