View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4496_low_10 (Length: 291)
Name: NF4496_low_10
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_low_10 |
 | |
|
| [»] scaffold0250 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-150; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 44623999 - 44623720
Alignment:
| Q |
1 |
tgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttggacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44623999 |
tgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaacttt |
44623900 |
T |
|
| Q |
101 |
aaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44623899 |
aaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttct |
44623800 |
T |
|
| Q |
201 |
gattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44623799 |
gattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt |
44623720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44614808 - 44614563
Alignment:
| Q |
1 |
tgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttggacttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||| |||| |||| |||||| |||||| | | |||||| | |||| |
|
|
| T |
44614808 |
tgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttgtttcaaacatt---ttcactcgaccttt |
44614712 |
T |
|
| Q |
101 |
aaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttct |
200 |
Q |
| |
|
||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | | |||||| |
|
|
| T |
44614711 |
aaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttct |
44614612 |
T |
|
| Q |
201 |
gattcaaagtccctcaataggccttccaattcaccctttttagattcaa |
249 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||| ||| |||| |
|
|
| T |
44614611 |
gattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa |
44614563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
| Q |
99 |
ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt |
198 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||| || | ||||| ||||||||||||||| | |||||| || | |||||||||| | | |||| |
|
|
| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt |
39473736 |
T |
|
| Q |
199 |
ctgattc |
205 |
Q |
| |
|
||||||| |
|
|
| T |
39473737 |
ctgattc |
39473743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 270
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
| Q |
123 |
aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc |
222 |
Q |
| |
|
|||||| ||||| || |||||||| ||||||||||||||| | |||||| | | |||||||||| | | ||||||||||| || ||| ||| ||| |
|
|
| T |
39459064 |
aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc |
39458965 |
T |
|
| Q |
223 |
cttccaattcaccctttttagattcaaactcatttacttgaccatcaa |
270 |
Q |
| |
|
|||| |||||| ||| ||| ||||||| ||| ||| || ||||||||| |
|
|
| T |
39458964 |
cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa |
39458917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
| Q |
87 |
ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt |
172 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||| |||||| ||||| ||| ||| |||| || |||||||| |||| |||||| |
|
|
| T |
39389332 |
ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt |
39389417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
| Q |
140 |
ttcaaattccttttcttttgattcaaactccttt |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
39390708 |
ttcaaattccttctcttttgattcaaactccttt |
39390741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 280
Target Start/End: Complemental strand, 40347507 - 40347367
Alignment:
| Q |
140 |
ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| || | ||| |||||||||||| |
|
|
| T |
40347507 |
ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt |
40347408 |
T |
|
| Q |
240 |
ttagattcaaactcatttacttgaccatcaagtatattctt |
280 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40347407 |
ttagattcaaactcatttactcgaccatcaagtatattctt |
40347367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4374 - 4326
Alignment:
| Q |
1 |
tgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt |
49 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4374 |
tgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt |
4326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
| Q |
80 |
aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac |
133 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||| |||||| |||| |
|
|
| T |
51574654 |
aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac |
51574601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University