View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_low_2 (Length: 444)
Name: NF4496_low_2
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 258 - 442
Target Start/End: Original strand, 51437738 - 51437922
Alignment:
| Q |
258 |
cctcccatcacagatctctaaaaacctccattccctctcatcacaaaccctaatatctcatcgatcgtgtcacactctcgttatacattgtttatttacc |
357 |
Q |
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| T |
51437738 |
cctcccatcacagatctctaaaaacctccattccctctcatcacaaaccctaatatctcatcgatcgtgtcacactctcgttatacattgtttatttacc |
51437837 |
T |
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| Q |
358 |
ctctcttatacacttcactcatcaatgactttggaaccttcgcgaatctctctcatcttcatggaccaacgccatctttacgatg |
442 |
Q |
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| T |
51437838 |
ctctcttatacacttcactcatcaatgactttggaaccttcgcgaatctctctcatcttcatggaccaacgccatctttacgatg |
51437922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 48313185 - 48313044
Alignment:
| Q |
19 |
agtttctccctttcatctttatccaccatgacacaaccttcttctttttgttgcaacaactaatgaatgtttcacccatttacttgataactttattctt |
118 |
Q |
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| T |
48313185 |
agtttccccctttcatctttatccaccatgacacaaccttcttctttttgttgcaacaactaatgaatgtttcacccatttacttgataactttattctt |
48313086 |
T |
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| Q |
119 |
ccatttctaacctctcttctatctatctggggttcctttcaaacaaa |
165 |
Q |
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| T |
48313085 |
ccatttctaacctcttctctatct-----gggttcctttcaaacaaa |
48313044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 48313049 - 48313015
Alignment:
| Q |
193 |
aacaaaggaaaagacaaaacatacccaaccttacc |
227 |
Q |
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| T |
48313049 |
aacaaaggaaaagacaaaacatacccaaccttacc |
48313015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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