View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_low_3 (Length: 405)
Name: NF4496_low_3
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 24268657 - 24269043
Alignment:
| Q |
16 |
caaacaagacagaatatcccgaaagcaaagggttgatgattatgcggcacacaaagacagtaaaaataaaatataaaacatggcaatccactccatcatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24268657 |
caaacaagacagaatatcccgaaagcaaagggttgatgattatgcggcacacaaagacagtaaaaataaaatataaaacatggcaatccactccat---g |
24268753 |
T |
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| Q |
116 |
ttaggtcgcaagtttgaaacagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatagagtcttga |
215 |
Q |
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| T |
24268754 |
ttaggtcgcaagtttgaaacagatccatcacaaagctcaattattcacacacttttggctctagcttaagcacttatataaactaataatagagtcttga |
24268853 |
T |
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| Q |
216 |
gaaactagtgcttgatgaatacttaataatcaagttttaagtagaccataaataagcacatgtaagaactgagggaacggtcatttgcaaagatcaacca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268854 |
gaaactagtgcttgatgaatacttaataatcaagttttaagtagaccataaataagcacatgtaagaactgagggaacggtcatttgcaaagatcaacca |
24268953 |
T |
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| Q |
316 |
aacacagtagcagcgtatcagacggtagaagcgacagattctttcacaattgttacagggcaacttgcagttgaagtgacataagtggac |
405 |
Q |
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| T |
24268954 |
aacacagcagcagcgtatcagacggtaggagcgacagattctttcacaattgttacagggcaacttgcatttgaagtgacataagtggac |
24269043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 34858736 - 34858819
Alignment:
| Q |
123 |
gcaagtttgaaacagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
207 |
Q |
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| T |
34858736 |
gcaagtttgaaacggatccatcacaaagctcaattattaacatacttttggctc-agcttaagcacttatataaacaaaaaatag |
34858819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 1704879 - 1704953
Alignment:
| Q |
123 |
gcaagtttgaaacagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaac |
198 |
Q |
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| T |
1704879 |
gcaagtttgaaacggatccatcacaaagctcaattattaacatacttttggctc-agcttaagcacttatataaac |
1704953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 369
Target Start/End: Original strand, 24683212 - 24683320
Alignment:
| Q |
261 |
ccataaataagcacatgtaagaactgagggaacggtcatttgcaaagatcaaccaaacacagtagcagcgtatcagacggtagaagcgacagattctttc |
360 |
Q |
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|||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| |||| | ||| |||||||||||||||||||||||||| |
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| T |
24683212 |
ccataaataagcacatgtaagaaccgaggaaacagtcatttgcaaagatcaaacaaacacagcagcaacatatgagacggtagaagcgacagattctttc |
24683311 |
T |
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| Q |
361 |
acaattgtt |
369 |
Q |
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| T |
24683312 |
acaattgtt |
24683320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 24683150 - 24683210
Alignment:
| Q |
147 |
aaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
207 |
Q |
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| T |
24683150 |
aaagctcaattattaacacacttttggctttagcttaagcacttatataaactaaaaatag |
24683210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 42730487 - 42730571
Alignment:
| Q |
123 |
gcaagtttgaaacagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
207 |
Q |
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| T |
42730487 |
gcaagtttgaaacggatccatcacaaagctcaattattaacatacttttggctctagcttaagcacttatataaacaaaaaatag |
42730571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 3044691 - 3044609
Alignment:
| Q |
125 |
aagtttgaaacagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
207 |
Q |
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| T |
3044691 |
aagtttgaaacggatccatcacaaagctcaattattaacatatttttggctctagcttaagcacttatataaacaaaaaatag |
3044609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 28968623 - 28968540
Alignment:
| Q |
123 |
gcaagtttgaaacagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
28968623 |
gcaagtttgaaacggatccatcacaaagctcaattattaacatacttttggctc-agcttaagcacttatataaacaaaaaatag |
28968540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 6453384 - 6453345
Alignment:
| Q |
168 |
ttttggctctagcttaagcacttatataaactaataatag |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
6453384 |
ttttggctctagcttaagcacttatataaactaaaaatag |
6453345 |
T |
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