View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_low_4 (Length: 371)
Name: NF4496_low_4
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 147 - 356
Target Start/End: Complemental strand, 31865107 - 31864898
Alignment:
| Q |
147 |
agtgaatagataataacatttttgcatcaatcaaattactatacaaaatgagaaggcaaaaagaatctctgcctcttacttcttgtaggacaattagata |
246 |
Q |
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| T |
31865107 |
agtgaatagataataacatttttgcatcaatcaaattactatacaaaatgagaaggcaaaaagaatctctgcctcttacttcttgtaggacaattagata |
31865008 |
T |
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| Q |
247 |
ccattgatgatgaagcaattttggtcactgctgatttaagggactgtttgagagtattaatgcaaacattttcttcactgtccttagaacaaagcaccaa |
346 |
Q |
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| T |
31865007 |
ccattgatgatgaagcaattttggtcactgctgatttaagggactgtttgagagtattaatgcaaacattttcttcactgtccttagaacaaagcaccaa |
31864908 |
T |
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| Q |
347 |
tatacctttg |
356 |
Q |
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||||| |||| |
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| T |
31864907 |
tatacttttg |
31864898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 31865234 - 31865182
Alignment:
| Q |
17 |
atatttcatctccctaatggacaaactatatatcttagaggtatacaataaat |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31865234 |
atatttcatctccctaatggacaaactatatatcttagaggtatacaataaat |
31865182 |
T |
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