View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4496_low_6 (Length: 328)
Name: NF4496_low_6
Description: NF4496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4496_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 148 - 323
Target Start/End: Original strand, 41968670 - 41968857
Alignment:
| Q |
148 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaa---catta---------taaagaattaatggaacccttttgtacattgat |
235 |
Q |
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| T |
41968670 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaataacattaaaaaggatataaagaattaatggaacccttttgtacattgat |
41968769 |
T |
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| Q |
236 |
agaaaatcatgtaaataattttggtcatcacctcttctttatttacagttcattactagttcagttcttagatctctgctcctccaca |
323 |
Q |
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| T |
41968770 |
agaaaatcatgtaaataattttggtcatcacctcttctttatttacagttcattactagttcaattcttagatctctcctcctccaca |
41968857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 41968548 - 41968621
Alignment:
| Q |
20 |
ggagtcactggagctggtggagttgtgggagttgcaggagtttctggagttgaatctgaagctgtagttgaagt |
93 |
Q |
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| T |
41968548 |
ggagtcactggagctggtggagttgtcggagttgcaggagtttctggagttgaatctgaagctgtagttgaagt |
41968621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 1235723 - 1235782
Alignment:
| Q |
148 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaacattataaag |
207 |
Q |
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| T |
1235723 |
ctcaatggtagctcctattatatgagcctgaaataaaatcattcatgtaacattaaaaag |
1235782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 1235586 - 1235637
Alignment:
| Q |
20 |
ggagtcactggagctggtggagttgtgggagttgcaggagtttctggagttg |
71 |
Q |
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| T |
1235586 |
ggagtcaccggagctggtggagttgtcggagttgctggagtttctggagttg |
1235637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 1235630 - 1235673
Alignment:
| Q |
37 |
tggagttgtgggagttgcaggagtttctggagttgaatctgaag |
80 |
Q |
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| T |
1235630 |
tggagttgttggagttaccggagtttctggagttgaatctgaag |
1235673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 29522024 - 29521954
Alignment:
| Q |
252 |
aattttggtcatcacctcttctttatttacagttcattactagttcagttcttagatctctgctcctccac |
322 |
Q |
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| T |
29522024 |
aattttggtcatcacctcttctttatttacagttcattactccttcaattcctagatctctcctcctccac |
29521954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 35739589 - 35739644
Alignment:
| Q |
253 |
attttggtcatcacctcttctttatttacagttcattactagttcagttcttagat |
308 |
Q |
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| T |
35739589 |
attttggtcatcacctcttctttctttacggttcattactccttcaattcttagat |
35739644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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