View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4497-Insertion-1 (Length: 1096)

Name: NF4497-Insertion-1
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4497-Insertion-1
NF4497-Insertion-1
[»] chr1 (6 HSPs)
chr1 (7-652)||(30848083-30848728)
chr1 (651-919)||(30848815-30849082)
chr1 (766-857)||(6397735-6397826)
chr1 (730-810)||(42517089-42517169)
chr1 (727-851)||(41941052-41941178)
chr1 (665-707)||(6397844-6397886)
[»] chr6 (4 HSPs)
chr6 (725-906)||(10383960-10384140)
chr6 (670-708)||(9405127-9405165)
chr6 (745-905)||(1415476-1415636)
chr6 (728-803)||(9627260-9627333)
[»] chr8 (1 HSPs)
chr8 (769-903)||(14958005-14958139)
[»] chr4 (1 HSPs)
chr4 (727-855)||(3284176-3284307)
[»] chr7 (1 HSPs)
chr7 (665-708)||(18020207-18020250)
[»] chr5 (2 HSPs)
chr5 (667-840)||(19276806-19276990)
chr5 (835-882)||(38755682-38755729)
[»] scaffold0154 (1 HSPs)
scaffold0154 (765-810)||(19341-19386)
[»] chr3 (2 HSPs)
chr3 (824-904)||(8543077-8543155)
chr3 (726-763)||(11627828-11627865)


Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 7 - 652
Target Start/End: Original strand, 30848083 - 30848728
Alignment:
Q  7 aacaaagacatgagggtccattccattattaaatgaagcctctactaggaaatattgaagcacaagagccacctgaacaagaaccataaaaaggtgaggc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30848083 aacaaagacatgagggtccattccattattaaatgaagcctctactaggaaatattgaagcacaagagccacctgaacaagaaccataaaaaggtgaggc 30848182  T
Q  107 ttaaatttctcatacaccacccaaaatgtttgttcattattagtcatagctttaaaattttgtgcttaacttaagttctccttgattatatttgtgtgta 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30848183 ttaaatttctcatacaccacccaaaatgtttgttcattgttagtcatagctttaaaattttgtgcttaacttaagttctccttgattatatttgtgtgta 30848282  T
Q  207 gaagttatagacttgtttatttatatatacatgcatgcttgcatcaaattcctaatggaaactgatttgaaaggtgaaaactaatttgattaaatggtct 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30848283 gaagttatagacttatttatttatatatacatgcatgcttgcatcaaattcctaatggaaactgatttgaaaggtgaaaactaatttgattaaatggtct 30848382  T
Q  307 atcaaagaattgaaagtaattcttcgacaatatattatcatcatagaatattgacagcttcattacacacctatatcttattaacttttatctcctagac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30848383 atcaaagaattgaaagtaattcttcgacaatatattatcatcatagaatattgacagcttcattacacacctatatcttattaacttttatctcctagac 30848482  T
Q  407 ttgaaggaatacagaataatatataccatggacaaatattttggaggtgaaagttaattctgttctagtttcnnnnnnnnntatgcatgagcataaatat 506  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  30848483 ttgaaggaatacagaataatatatactatggacaaatattttggaggtgaaagttaattctgttctagtttcaaaaaaaaatatgcatgagcataaatat 30848582  T
Q  507 actaatatggttgtctctaatacatgcaaaaatgcagattaatttatttcatgaatgaacttatccttttcaattttggcctttgannnnnnnnnnnncc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  30848583 actaatatggttgtctctaatacatgcaaaaatgcagattaatttatttcatgaatgaacttatccttttcaattttggcctttgattttttttttttcc 30848682  T
Q  607 cttggcaggaataatataggctagaaattcactagtttttatcctc 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30848683 cttggcaggaataatataggctagaaattcactagtttttatcctc 30848728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 651 - 919
Target Start/End: Original strand, 30848815 - 30849082
Alignment:
Q  651 tctttcttcaaatgtgttaaagtatggctcatatattcaagacactaaagaaggcaagaggcggaggctctcgcggtacggttcaagggtaatattgtaa 750  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30848815 tctttcttcaaatgtgttaaagtatggctcatatattcaagacactaaagaaggcaagaggcggaggctctcgcggtacggttcaagggtaatattgtaa 30848914  T
Q  751 actgaattgtagtggtactatatatattgtttgtaccgcttaaaccctaattcatcacagtaacataaacaatactatagttgctctataatcgcagagg 850  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  30848915 actgaattgtagtggtactatatatattgtttgtaccacttaaaccctaattcatcacagtagcagaaacaatactatagttgctctataatcgcagagg 30849014  T
Q  851 taggcaccattggctaaactgtattaacaaattgatcgtgtgttcattgtctttta-tttagtttcttat 919  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||||||||| |||||||||||||    
T  30849015 taggcaccattggctaaactgttttaacaaa--gatagtgtgttcattgtcttttattttagtttcttat 30849082  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 766 - 857
Target Start/End: Complemental strand, 6397826 - 6397735
Alignment:
Q  766 tactatatatattgtttgtaccgcttaaaccctaattcatcacagtaacataaacaatactatagttgctctataatcgcagaggtaggcac 857  Q
    |||||||||||||| ||||| | || ||||| || ||||||||||||| | |||||| ||||||| ||||||||| || |||||||||||||    
T  6397826 tactatatatattgcttgtaacactgaaaccttagttcatcacagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcac 6397735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 730 - 810
Target Start/End: Original strand, 42517089 - 42517169
Alignment:
Q  730 ggttcaagggtaatattgtaaactgaattgtagtggtactatatatattgtttgtaccgcttaaaccctaattcatcacag 810  Q
    |||||||||||| | |||||| || ||| ||||| ||||||||||||||||||||| | |  |||||||||||||||||||    
T  42517089 ggttcaagggtattgttgtaatctaaatcgtagtagtactatatatattgtttgtaacaccgaaaccctaattcatcacag 42517169  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 727 - 851
Target Start/End: Original strand, 41941052 - 41941178
Alignment:
Q  727 tacggttcaagggtaatattgtaaactgaa---ttgtagtggtactatatatattgtttgtaccgcttaaaccctaattcatcacagtaacataaacaat 823  Q
    ||||||| | ||||||||||||||||||||   | ||||| ||| ||||||||||  ||||| |  | |||||||||||||||||| ||||||||| |      
T  41941052 tacggtttaggggtaatattgtaaactgaatcgtagtagtagtagtatatatattacttgtaacattgaaaccctaattcatcaca-taacataaataga 41941150  T
Q  824 actatagttgctctataatcgcagaggt 851  Q
    ||||||| | ||||||  ||||||||||    
T  41941151 actatagctactctattgtcgcagaggt 41941178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 665 - 707
Target Start/End: Complemental strand, 6397886 - 6397844
Alignment:
Q  665 tgttaaagtatggctcatatattcaagacactaaagaaggcaa 707  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||    
T  6397886 tgttgaagtatgactcatatatgcaagacactaaagaaggcaa 6397844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 5e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 725 - 906
Target Start/End: Complemental strand, 10384140 - 10383960
Alignment:
Q  725 ggtacggttcaagggtaatattgtaaactgaattgtagtggtactatatatattgtttgtaccgcttaaaccctaattcatcacagtaacataaacaata 824  Q
    ||||||||||| |||||||||| |||||||||| ||||| || |||||||||||  || ||   || ||||||||||| |||||||||| | |||  | |    
T  10384140 ggtacggttcatgggtaatattataaactgaatcgtagtagttctatatatattacttataatactaaaaccctaatttatcacagtaatacaaatgaaa 10384041  T
Q  825 ctatagttgctctataatcgcagaggtaggcaccattggctaaac-tgtattaacaaattgatcgtgtgttcattgtctttta 906  Q
    ||||| ||| |||||||||||||||||| ||| |||||||  ||| ||| ||||||||  |||| ||||||||||||||||||    
T  10384040 ctataattgttctataatcgcagaggtaagcatcattggccgaacatgtgttaacaaa--gatcatgtgttcattgtctttta 10383960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 670 - 708
Target Start/End: Original strand, 9405127 - 9405165
Alignment:
Q  670 aagtatggctcatatattcaagacactaaagaaggcaag 708  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  9405127 aagtatggctcatatatacaagacactaaagaaggcaag 9405165  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 745 - 905
Target Start/End: Original strand, 1415476 - 1415636
Alignment:
Q  745 ttgtaaactgaattgtagtggtactatatatattgtttgtaccgcttaaaccctaattc--atcacagtaacataaacaatactatagttgctctataat 842  Q
    |||||||||||||  |||| ||||||||||||    ||||| |  | ||||||||||||  |||||| ||| | |||||  ||||||| |||||||||||    
T  1415476 ttgtaaactgaatcatagtagtactatatatacaacttgtaacattgaaaccctaattcttatcacaataatagaaacagaactatagctgctctataat 1415575  T
Q  843 cgcagaggtaggcaccattggctaaactgtattaacaaattgatcgtgtgttcattgtctttt 905  Q
    || |||||||| ||| ||||||  |||||  ||||||| |  ||||||| || ||||||||||    
T  1415576 cgtagaggtagccacaattggccgaactgcgttaacaagt--atcgtgtatttattgtctttt 1415636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 728 - 803
Target Start/End: Complemental strand, 9627333 - 9627260
Alignment:
Q  728 acggttcaagggtaatattgtaaactgaattgtagtggtactatatatattgtttgtaccgcttaaaccctaattc 803  Q
    |||||| | ||||||||||||||||||||| ||||| |||||||  |||||| ||||| | || ||||||||||||    
T  9627333 acggtttaggggtaatattgtaaactgaatcgtagtagtactat--atattgcttgtaacactgaaaccctaattc 9627260  T

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Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 769 - 903
Target Start/End: Original strand, 14958005 - 14958139
Alignment:
Q  769 tatatatattgtttgtaccgcttaaaccctaattcatc--acagtaacataaacaatactatagttgctctataatcgcagaggtaggcaccattggcta 866  Q
    ||||||||||| ||||| | || |||||||||||| ||  ||||||| | |||||  ||||||| |||||||||||||||||||||||||| ||||||      
T  14958005 tatatatattgcttgtaacactgaaaccctaattcttctcacagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccg 14958104  T
Q  867 aactgtattaacaaattgatcgtgtgttcattgtctt 903  Q
    |||||| |||||||||  ||| | |||||||||||||    
T  14958105 aactgtgttaacaaat--atcctatgttcattgtctt 14958139  T

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Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 727 - 855
Target Start/End: Complemental strand, 3284307 - 3284176
Alignment:
Q  727 tacggttcaagggtaatattgtaaactgaattgtagtggtacta---tatatattgtttgtaccgcttaaaccctaattcatcacagtaacataaacaat 823  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| ||   ||||| ||| ||||| |||| |||||||||||||||||||||| | ||||       
T  3284307 tacggttcaagagtaatattgtaaacttaattgtagtagtagtaatatatattttgcttgtaacgctaaaaccctaattcatcacagtaataaaaacgga 3284208  T
Q  824 actatagttgctctataatcgcagaggtaggc 855  Q
    |||||| ||| |||||| || ||||| |||||    
T  3284207 actataattgttctatagtcacagagataggc 3284176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 665 - 708
Target Start/End: Original strand, 18020207 - 18020250
Alignment:
Q  665 tgttaaagtatggctcatatattcaagacactaaagaaggcaag 708  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  18020207 tgttaaagtatggctcgtatatgcaagacactaaagaaggcaag 18020250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 667 - 840
Target Start/End: Original strand, 19276806 - 19276990
Alignment:
Q  667 ttaaagtatggctcatatattcaagacactaaagaaggcaag------aggcgg-aggctctcgcggtacggttc-aagggtaatattgtaaactgaatt 758  Q
    |||||||||| |||||||||   |||||||||||||||||||      |||||| || ||| | ||||| ||||  |||||||||||||||| ||||||     
T  19276806 ttaaagtatgactcatatatattagacactaaagaaggcaagggacacaggcggtagtctcccacggtaaggttttaagggtaatattgtaatctgaatc 19276905  T
Q  759 gtagtg---gtactatatatattgtttgtaccgcttaaaccctaattcatcacagtaacataaacaatactatagttgctctata 840  Q
    |||||    ||||||||||||||| | ||| |  | ||||||||| |||||||||||| | |||| | |||||||||| ||||||    
T  19276906 gtagtaattgtactatatatattgctagtaacattgaaaccctaaatcatcacagtaatacaaacgaaactatagttgatctata 19276990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 835 - 882
Target Start/End: Original strand, 38755682 - 38755729
Alignment:
Q  835 tctataatcgcagaggtaggcaccattggctaaactgtattaacaaat 882  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||    
T  38755682 tctataatcgcagaggtaggcacaattgaccaaactgtattaacaaat 38755729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 765 - 810
Target Start/End: Original strand, 19341 - 19386
Alignment:
Q  765 gtactatatatattgtttgtaccgcttaaaccctaattcatcacag 810  Q
    ||||||||||||||||||||| |  | |||||||||||||||||||    
T  19341 gtactatatatattgtttgtaacagtgaaaccctaattcatcacag 19386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 904
Target Start/End: Original strand, 8543077 - 8543155
Alignment:
Q  824 actatagttgctctataatcgcagaggtaggcaccattggctaaactgtattaacaaattgatcgtgtgttcattgtcttt 904  Q
    |||||||||| |||||| || | ||||||||||| ||||||  |||||  |||||||||  ||||| ||||||||||||||    
T  8543077 actatagttgttctatagtcaccgaggtaggcacaattggccgaactgcgttaacaaat--atcgtatgttcattgtcttt 8543155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 763
Target Start/End: Original strand, 11627828 - 11627865
Alignment:
Q  726 gtacggttcaagggtaatattgtaaactgaattgtagt 763  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  11627828 gtacggttcaggggtaatattgtaaactggattgtagt 11627865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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