View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4497-Insertion-11 (Length: 520)
Name: NF4497-Insertion-11
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 43961123 - 43960623
Alignment:
| Q |
8 |
ataagcaccaaacagaggtctcaaacccgtcgtcattgtcagagaccggaggagaataaattcatcaaagaaaatcgtctactcttgattcaacaattgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43961123 |
ataagcaccaaacagaggtctcaaacccgtcgtcattgtcagagaccggaggagaataaattcatcaaagaaaatcgtctactcttgattcaacaattgc |
43961024 |
T |
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| Q |
108 |
aagagtatagatgttctcacaggtgttttgctacttgnnnnnnnnnnnnnnnnnnnnatccaaaactctcacctataaatatcttcatacacattctttt |
207 |
Q |
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| T |
43961023 |
aagagtatagatgttctcgtaggtgttttgctacttgtatatata------------atccaaaactctcacctataaatatcttcatacacattctttt |
43960936 |
T |
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| Q |
208 |
cacttgtaaaatctaaacatgcatctttcacccgacaattgtaccatagtagtttgattaaaaatattggtgagaatagtacccaaaaaacgttcataag |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43960935 |
cacttgtaaaatctaaacatgcatctttcacccgacaattgtaccatagtagtttgattaaaaatgttggtgagaatagtacccaaaaaacgttcataag |
43960836 |
T |
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| Q |
308 |
aaataatcaaatgataaatacaagattaagagtaatcccactattttattattcattatcatttatatgattatnnnnnnnttgtgtaaaaagacattta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43960835 |
aaataatcaaatgataaatacaagattaagagtaatcccactattttattattcattatcatttatatgattataaaaaaattgtgtaaaaagacattta |
43960736 |
T |
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| Q |
408 |
taaaatttattaatctgcgaaatctaaatgatacgatgcatatgagtttatgaccgttaggcagaggccgtaataattgattgnnnnnnngtgttaaccc |
507 |
Q |
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| T |
43960735 |
taaaatttattaatctgcgaaatctaaatgataggatgcatatgagtttatgaccgttaggcagaggccgtaataattgattgtttttttgtgttaaccc |
43960636 |
T |
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| Q |
508 |
ttaacacccctag |
520 |
Q |
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| T |
43960635 |
ttaacgcccctag |
43960623 |
T |
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