View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4497-Insertion-2 (Length: 1067)
Name: NF4497-Insertion-2
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 867
Target Start/End: Complemental strand, 30560246 - 30559389
Alignment:
| Q |
7 |
acatctcatttgaagtgtcaaatcaactaga-gaattgcagcgaaaaagtgaatccgaaggaagaaaaacattatcggcatattgaatatgaagcttctg |
105 |
Q |
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||||||||||||||| ||||| || | || | || ||||||| ||||||| ||| |||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
30560246 |
acatctcatttgaagcgtcaattcgattaaaagatttgcagctaaaaagttaattagaagaaaggaaaactttatcggcatattgaatatgaagcttctg |
30560147 |
T |
|
| Q |
106 |
aactctcctttctaagataaaggaaatccattcacttat--ctgagatgtgtcatattgatgactagttaagcaaagagagaaactttggatgctcgagt |
203 |
Q |
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| T |
30560146 |
aattctcgtttctaagataaagcaaatccattcacttatttctgagatgtatcatatggatgactagttaagcaaagaaagaaactttggatgctcgagt |
30560047 |
T |
|
| Q |
204 |
tagtgaagtgaataagcactttttcaacaaaattcagaaactgttccttttgcatccttttcttcttagaaccgagcaaactatcatcaaactttagatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||| | ||||||||||||||||||||| | |
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| T |
30560046 |
tagtgaagtgaataagcactttttcaacaaaattcacaaactgttcctttttcatttttttcttcatagaaccaaacaaactatcatcaaactttagtct |
30559947 |
T |
|
| Q |
304 |
ggttatggatgtccaaacttcaatccatcttcttgataagacgctagtgctaactgcgtatacaattggaattaaagacaagatatgaccaagaatactt |
403 |
Q |
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||||||||||||| || |||||||||||| |||||||||||||||||||||||| | || |||||||||||| ||||| | ||| ||||||||||| ||| |
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| T |
30559946 |
ggttatggatgtcgaatcttcaatccatcatcttgataagacgctagtgctaaccgtgtctacaattggaatgaaagataggatgtgaccaagaatgctt |
30559847 |
T |
|
| Q |
404 |
tcatgtaaattgctaatcatgtctctttctcttactgttgtttcccttgaaggaaggtgttttgtttcatcttttatagttgcatcattcgaatccatga |
503 |
Q |
| |
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| T |
30559846 |
tcatgtaaagtgctaatcat-tctctttctcctactgatgtttcccctgatggaaggtgttttgtttcatcttccatagttgcattgttcgaatccatga |
30559748 |
T |
|
| Q |
504 |
ctgcctacaaaagcatctgattcacaataaattacagttttcagctattatgatgtaatgaaacaaatcttttgtatcatatgtaaccataagtccataa |
603 |
Q |
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|| | |||||||||| |||||||||||||||| ||||| |||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30559747 |
ctacttacaaaagcacctgattcacaataaatgacagtgttcagctactctgttgtaatgaaacaaatctattgtatcatatgtaaccataagtccataa |
30559648 |
T |
|
| Q |
604 |
cctaaacaagtag-tttaagctcaagttattaatgatatttagttaatgatgaatgaatcgaaagaaacacgagttcggatccttgctagaacaatctat |
702 |
Q |
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| T |
30559647 |
cctaaacaagtagttttaagttcaagtgattaatgatatttagttaatgacggattgtttgaaagaaacacgagttcggatccttgttagaacaatctat |
30559548 |
T |
|
| Q |
703 |
ggccaaaatttacttatctcttggccaaactccaaattaccaaagtccctttcccgtggaaaccaaagctatagggaaagnnnnnnnnnntgtgtccata |
802 |
Q |
| |
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| | |||||||||| ||| || || ||||||| |||| ||||||||| |||||||||||||||||||| ||||| ||||| |||| |
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| T |
30559547 |
agttagaatttacttacctcctgtcccaactccagattattggagtcccttttccgtggaaaccaaagctataaggaaa----aaaaaaatgtgttcata |
30559452 |
T |
|
| Q |
803 |
accccaagcttgcattgctgaaagtcccacgtcgaataattatatgagttgaacaatgattataa |
867 |
Q |
| |
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| | ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
30559451 |
aacacaagcttgcattgctgaaa--accacatcgaataattatatgagctgaacaatgattataa |
30559389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 7 - 452
Target Start/End: Complemental strand, 30551537 - 30551092
Alignment:
| Q |
7 |
acatctcatttgaagtgtcaaatcaactagagaattgcagcgaaaaagtgaatccgaaggaagaaaaacattatcggcatattgaatatgaagcttctga |
106 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||| |
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| T |
30551537 |
acatctcatttgaagcgtcaaatcgactagagaattgcagcgaaaaagtgaatcggaaggaaggaaaactttatcagcatattgaatatgaagcttttga |
30551438 |
T |
|
| Q |
107 |
actctcctttctaagataaaggaaatccattcacttatctgagatgtgtcatattgatgactagttaagcaaagagagaaactttggatgctcgagttag |
206 |
Q |
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||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |
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| T |
30551437 |
actctcctttctaggataaaggaaatccattcacttaacttagatgcatcatattgatggctagttaaggaaagagagaaactttggatgcttgagttag |
30551338 |
T |
|
| Q |
207 |
tgaagtgaataagcactttttcaacaaaattcagaaactgttccttttgcatccttttcttcttagaaccgagcaaactatcatcaaactttagattggt |
306 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||| |
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| T |
30551337 |
tgaaatgaataagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggt |
30551238 |
T |
|
| Q |
307 |
tatggatgtccaaacttcaatccatcttcttgataagacgctagtgctaactgcgtatacaattggaattaaagacaagatatgaccaagaatactttca |
406 |
Q |
| |
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|||| || ||||||| |||| |||||||||||||||||||||||||||||| |||| ||| || ||||| ||||||| ||| |||| |||||| |||||| |
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| T |
30551237 |
tatgcatttccaaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgatcggaatgaaagacaggatctgactaagaatgctttca |
30551138 |
T |
|
| Q |
407 |
tgtaaattgctaatcatgtctctttctcttactgttgtttcccttg |
452 |
Q |
| |
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||||| |||||||||| |||||||||| | || |||||||||||| |
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| T |
30551137 |
tgtaatgtgctaatcatatctctttctccttctattgtttcccttg |
30551092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 793 - 844
Target Start/End: Complemental strand, 30550816 - 30550765
Alignment:
| Q |
793 |
tgtgtccataaccccaagcttgcattgctgaaagtcccacgtcgaataatta |
844 |
Q |
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|||| |||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
30550816 |
tgtgaccataacctcaagcttgcattgctcaaagtcccacatcgaataatta |
30550765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 568 - 707
Target Start/End: Complemental strand, 30551015 - 30550878
Alignment:
| Q |
568 |
aaatcttttgtatcatatgtaaccataagtccataacctaaacaagtagtttaagctcaagttattaatgatatttagttaatgatgaatgaatcgaaag |
667 |
Q |
| |
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|||||| | |||||||||||||| ||||||||||||| ||| || | | || ||||||| | |||||||| ||||||||||||| ||| | |||||| |
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| T |
30551015 |
aaatctatcgtatcatatgtaactataagtccataacttaagcacat-ggttcagctcaaatgattaatgagatttagttaatgaagaaacattcgaaa- |
30550918 |
T |
|
| Q |
668 |
aaacacgagttcggatccttgctagaacaatctatggcca |
707 |
Q |
| |
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| |||| |||||| | |||||||| |||||||| |||||| |
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| T |
30550917 |
acacacaagttcgaagccttgctataacaatctttggcca |
30550878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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