View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4497-Insertion-6 (Length: 778)

Name: NF4497-Insertion-6
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4497-Insertion-6
NF4497-Insertion-6
[»] chr1 (1 HSPs)
chr1 (6-627)||(35889401-35890038)


Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 6 - 627
Target Start/End: Complemental strand, 35890038 - 35889401
Alignment:
Q  6 caaaagcagcggcgaagcctaaggctgttgtgaagccgaaagcaaagagtgttaaggctacgccggtgaagaaagcggcgaagaaggtggttgcaaagaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35890038 caaaagcagcggcgaagcctaaggctgttgtgaagccgaaagcaaagagtgtgaaggctacgccggtgaagaaagcggcgaagaaggtggttgcaaagaa 35889939  T
Q  106 gccgaagagtgttaagactccggtgaagaaagctaagaagtgaaaattagggtttaatttggggatttttagtgatgtgtgaaatttgagggtttatta- 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  35889938 gccgaagagtgttaagactccggtgaagaaagctaagaagtgaaaattagggtttaatttgggaatttttagtgatgtgtgaaatttgagggtttattat 35889839  T
Q  205 -------------gagttggattttattatcataatataatat-----tattaggaagttgttgctgtaaattctttgataggaacatatctaatgttct 286  Q
                 ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889838 tatatgagtattagagttggattttattatcataatataatataatattattaggaagttgttgctgtaaattctttgataggaacatatctaatgttct 35889739  T
Q  287 tgtattatctctacaaatcctaatgaatcaggttttctgttttctctaattttgatttgtgaatttaatttctgtatctgttttatgaaaccgtccttag 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35889738 tgtattatctctacaaatcctaatgaatcaggttttctgttttctctaattttgatttgtgaatttaatttctgcatctgttttatgaaaccgtccttag 35889639  T
Q  387 attcgtattttctttgttgaacttt-actttgttaagaagcaatggttagaaaatgttacgtgttaaatcgaaattaaagaggcgttaattatactatac 485  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35889638 attcttattttatttgttgaactttaactttgttaagaagcaatggttagaaaatgttacgtgttaaatcgaaattaaagaggcgttaattatgctatac 35889539  T
Q  486 aggaaccatggtttgaagtattttgggtggtttgggaatgtgaaaggaatacgtgcttattgcttaaaatacatacatggcgaaatctgtgacgtgcacg 585  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||||||||||||||    
T  35889538 agaaaccatggtttgaagtattttgggtggtttgggaatgtgaaaggaatacgtgcttattgcttaaa----atacatggcaaaatctgtgacgtgcacg 35889443  T
Q  586 ataactactgggcaatcagatattttaatcattttgcaacgt 627  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35889442 ataactactgggcaatcagatattttaatcattttgcaacgt 35889401  T

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