View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4497-Insertion-7 (Length: 771)
Name: NF4497-Insertion-7
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497-Insertion-7 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Complemental strand, 26840085 - 26839468
Alignment:
| Q |
7 |
actaataggtcctctttgctattcacgttgtagtgatatcactgaaaattttctttttagtgtatatctttatatttcat----------aaataatttt |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
26840085 |
actaataggtcctctttgctattcaagttgtagtgatatcactgaaaattcacattttagtgtatatctttatatttcattttattttataaataatttt |
26839986 |
T |
|
| Q |
97 |
tgtttgtgtgctgcatatagtatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggt |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26839985 |
tgtttgtgtgctgcatatattatgctctaaaaatttagtttgaaatgaaataatagcatttgaagtgtgactcatgttgcatttgtgcgattgttaaggt |
26839886 |
T |
|
| Q |
197 |
aagctgactttgtctttaattgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtcttacaatt |
296 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26839885 |
gagctaactttgtttttaattgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtcttacaatt |
26839786 |
T |
|
| Q |
297 |
ctatagttctgcataagtttcagactccagttttgatcttcgtccagtttttgaattgcatttctatctaatttgctattttctcttattagaatagcaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26839785 |
ctatagttctgcataagtttcagactccagttttgatcttcgtcctgtttttgaattgcatttctatctaatttgctattttctcttattagaatagcaa |
26839686 |
T |
|
| Q |
397 |
tagtactactttgcttaatttaaaaggtttttctcttttgttgaataacattgtgtcttagtccataaattagattatatcttttatttctgtactatag |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26839685 |
---tactactttgcttaatttaaaaggtttttctcttttgttgaatagcattgtgtcttagtccataaattagattatatcttttatttctgtactatag |
26839589 |
T |
|
| Q |
497 |
aggttgcttatgcatatgcaaatttaattagttttatcaggaatagcaactattcaattcaaatgttctgtaacgacttagtttctgtagggatgttgat |
596 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26839588 |
aggttgctgatgcatatgcaaatttaattagttttatcaggaatagcaactattcaattcaaatgttctgtaacgacttagtttctgtagggattttgat |
26839489 |
T |
|
| Q |
597 |
ttcctccaccatttctttcat |
617 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
26839488 |
ttcctccaccatttctttcat |
26839468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 34507533 - 34507428
Alignment:
| Q |
280 |
ggtagtgtcttacaattctatagttctgcataagtttcagactccagttttgatcttcgtccagtttttgaattgcatttctatctaatttgctattttc |
379 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
34507533 |
ggtagtgtcttacaattctatagttctacacaagtttcagaattcagttttgatcttcgtcctgtttttgaattggatttctatctaatttgctattttc |
34507434 |
T |
|
| Q |
380 |
tcttat |
385 |
Q |
| |
|
|||||| |
|
|
| T |
34507433 |
tcttat |
34507428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 29354516 - 29354621
Alignment:
| Q |
280 |
ggtagtgtcttacaattctatagttctgcataagtttcagactccagttttgatcttcgtccagtttttgaattgcatttctatctaatttgctattttc |
379 |
Q |
| |
|
|||||| |||| |||||||||| |||| || |||||||||| | |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |
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|
| T |
29354516 |
ggtagtatcttgcaattctatatttctacacaagtttcagaattcagttttgatcttcgtcctgtttttgaattggatttctttctaatttgctattttc |
29354615 |
T |
|
| Q |
380 |
tcttat |
385 |
Q |
| |
|
|||||| |
|
|
| T |
29354616 |
tcttat |
29354621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 34507736 - 34507633
Alignment:
| Q |
93 |
tttttgtttgtgtgctgcatatagtatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgtta |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
34507736 |
tttttgtttgtgtgctgcatatattatgctctagaattttgatttgaaatgaaataatgggatttgaaatgtgacttatgttgcatttttgcgattgttg |
34507637 |
T |
|
| Q |
193 |
aggt |
196 |
Q |
| |
|
|||| |
|
|
| T |
34507636 |
aggt |
34507633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 722 - 752
Target Start/End: Complemental strand, 26839368 - 26839338
Alignment:
| Q |
722 |
gggatggtggaataaccaaacaacttgacac |
752 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26839368 |
gggatggtggaataaccaaacaacttgacac |
26839338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Complemental strand, 50975179 - 50974567
Alignment:
| Q |
7 |
actaataggtcctctttgctattcacgttgtagtgatatcactgaaaattttctttttagtgtatatctttatatttc----------ataaataatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||| |
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|
| T |
50975179 |
actaataggtcctctttgctattcacgttgtagtgatatcactggaaattttctttt--gtgtatatctttatatttcgttttagtttataaata-tttt |
50975083 |
T |
|
| Q |
97 |
tgtttgtgtgctgcatatagtatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggt |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50975082 |
tgtttgtgtgctgcatatattatgctctaaaaattttgtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggt |
50974983 |
T |
|
| Q |
197 |
aagctgactttgtctttaattgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtcttacaatt |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
50974982 |
gagctgactttgtttttaattgtcttgacatgtatgcgaagggatttagatagcatttttacattcacagacttgattttagaggtagtgtcttacaatt |
50974883 |
T |
|
| Q |
297 |
ctatagttctgcataagtttcagactccagttttgatcttcgtccagtttttgaattgcatttctatctaatttgctattttctcttattagaatagcaa |
396 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
50974882 |
ctatagttctgcataaatttcagactccagttttgatcttcgtcctgtttttgaatttcatatctatc----ttgctattttctcttattagaatagcaa |
50974787 |
T |
|
| Q |
397 |
tagtactactttgcttaatttaaaaggtttttctcttttgttgaataacattgtgtcttagtccataaattagattatatcttttatttctgtactatag |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50974786 |
---tactactttgcttaatttaaaaggtttttctcttttgttgaatagcattgtatcttagtccataaattagattatatcttttatttatgtactatag |
50974690 |
T |
|
| Q |
497 |
aggt--tgcttatgcatatgcaaatttaattagttttatcaggaatagcaactattcaattcaaatgttctgtaacgacttagtttctgtagggatgttg |
594 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
50974689 |
aggtggtgcttatgcatatgcaaatttaattagttttatcgggaatagcaactatgcaattcaaatgttctgtaacgatttagtttacgtagagatgtta |
50974590 |
T |
|
| Q |
595 |
atttcctccaccatttctttcat |
617 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
50974589 |
atttcctccaccatttctttcat |
50974567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 488 - 580
Target Start/End: Complemental strand, 43600071 - 43599977
Alignment:
| Q |
488 |
gtactatagaggt--tgcttatgcatatgcaaatttaattagttttatcaggaatagcaactattcaattcaaatgttctgtaacgacttagttt |
580 |
Q |
| |
|
||||||||||||| |||| | |||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
43600071 |
gtactatagaggtagtgctcaggcatatacaaatttaattagttttatgaggaatagcaactatgcaatttaaatgttttgtaacgacttagttt |
43599977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 488 - 580
Target Start/End: Complemental strand, 14834108 - 14834014
Alignment:
| Q |
488 |
gtactatagaggt--tgcttatgcatatgcaaatttaattagttttatcaggaatagcaactattcaattcaaatgttctgtaacgacttagttt |
580 |
Q |
| |
|
||||||||||||| |||| | |||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
14834108 |
gtactatagaggtggtgctcaggcatatacaaatttaattagttttatgaggaatagcaactatgcaatttaaatgttttgtaacgacttagttt |
14834014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 52589754 - 52589796
Alignment:
| Q |
342 |
agtttttgaattgcatttctatctaatttgctattttctctta |
384 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
52589754 |
agtttttgaattgcattgctatctaatttgctactttatctta |
52589796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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