View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4497-Insertion-8 (Length: 584)

Name: NF4497-Insertion-8
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4497-Insertion-8
NF4497-Insertion-8
[»] chr2 (4 HSPs)
chr2 (76-545)||(13043944-13044408)
chr2 (76-198)||(14811171-14811293)
chr2 (76-189)||(14314443-14314556)
chr2 (492-556)||(8981215-8981279)
[»] chr7 (6 HSPs)
chr7 (76-193)||(26279864-26279981)
chr7 (76-193)||(30947457-30947574)
chr7 (131-193)||(37245380-37245442)
chr7 (111-189)||(19928336-19928414)
chr7 (76-122)||(45280729-45280775)
chr7 (76-124)||(30947607-30947655)
[»] chr3 (9 HSPs)
chr3 (119-193)||(39674089-39674163)
chr3 (103-193)||(53363108-53363198)
chr3 (76-193)||(4533372-4533489)
chr3 (119-193)||(39579804-39579878)
chr3 (131-193)||(53330797-53330859)
chr3 (131-193)||(53334481-53334543)
chr3 (131-193)||(53338158-53338220)
chr3 (76-124)||(39579944-39579992)
chr3 (113-193)||(42864251-42864331)
[»] scaffold0017 (1 HSPs)
scaffold0017 (111-191)||(38145-38225)
[»] chr8 (4 HSPs)
chr8 (131-193)||(10861889-10861951)
chr8 (119-193)||(20289271-20289345)
chr8 (119-193)||(21075901-21075975)
chr8 (76-189)||(29054467-29054579)
[»] chr6 (2 HSPs)
chr6 (131-193)||(8861951-8862013)
chr6 (76-124)||(11382565-11382613)
[»] chr4 (1 HSPs)
chr4 (131-189)||(563352-563410)
[»] chr5 (1 HSPs)
chr5 (77-193)||(6665623-6665739)
[»] chr1 (1 HSPs)
chr1 (111-191)||(46398188-46398268)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 76 - 545
Target Start/End: Original strand, 13043944 - 13044408
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13043944 taaatattaattgacttgtacttcttcgatacgcatatcgggatgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcaccattttta 13044043  T
Q  176 aa-gtatcggggcttcagacatcatagaagtgctctcattggaaagaggnnnnnnnnncggtgctta----ttgatcgaagatgctttaataaacacact 270  Q
    || ||||| |||||| |||||||||||||||||||||||||||||||||         | |||||||    ||||||||||||||||||||||||||||     
T  13044044 aaagtatcagggctttagacatcatagaagtgctctcattggaaagaggaaaaaaaa-cagtgcttaattattgatcgaagatgctttaataaacacacc 13044142  T
Q  271 ttatccgcgcatgtaggatgtacacattttttatattaaaataaattaatattgttgaaatgtaatgatgtattggtgtaactcatttaataaattttct 370  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13044143 ttatccacgcatgtgggatgtacacattttttacattaaaataaattaatattgttgaaatgtaatgatgtattggtgtaactcatttaataaattttct 13044242  T
Q  371 taaaatgttgagtggaagagattgaatgtttattaaatactaacaat--nnnnnnngaagataaaatgactcatgtataggtgaaatccgcttaagcact 468  Q
    ||||||||||||||||||||           ||||||||||||||||          |||||||||||||||||||||| ||||||||||||||||||||    
T  13044243 taaaatgttgagtggaagag-----------attaaatactaacaataaaaaaaaaaaagataaaatgactcatgtatacgtgaaatccgcttaagcact 13044331  T
Q  469 caagtgagaaaactccattgcggatgttctaaaactcctttaacaatagatcttgcaaatttattttttgtgtctac 545  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  13044332 caagtgagaaaacttcattgcggatgttctaaaactcttttaacaatagatcttgcaaatttatcttttgtgtctac 13044408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 14811293 - 14811171
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    ||||||||||||| | | ||||| | | |||||| ||||||||||||||||  | ||||| |||| |||| ||||||| |||||| |||||| ||||||     
T  14811293 taaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcggggcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttg 14811194  T
Q  176 aagtatcggggcttcagacatca 198  Q
    |||| ||||||||||||| ||||    
T  14811193 aagtgtcggggcttcagagatca 14811171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 14314443 - 14314556
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    ||||||||||||| | | ||||| | | |||||| ||||||||||||||||  | ||||| |||| |||| ||||||| |||||| |||||| ||||||     
T  14314443 taaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcggggcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttg 14314542  T
Q  176 aagtatcggggctt 189  Q
     |||||||||||||    
T  14314543 gagtatcggggctt 14314556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 8981279 - 8981215
Alignment:
Q  492 atgttctaaaactcctttaacaatagatcttgcaaatttattttttgtgtctacgtcttttatta 556  Q
    |||||||||||||| ||||||||||||||| || |||  || ||||||||||| ||| |||||||    
T  8981279 atgttctaaaactcttttaacaatagatctcgccaatacatcttttgtgtctaggtcgtttatta 8981215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 26279864 - 26279981
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    ||||||||||||| | | ||||| | | |||||  ||||||||||||||||  ||||||| |||| |||| ||||||| |||||| |||||| |||||||    
T  26279864 taaatattaattgcccgatacttttccgatacgtgtatcgggacgtatcggagcatatcggtatctgatacgtgtcggatacgatacttcaccattttta 26279963  T
Q  176 aagtatcggggcttcaga 193  Q
     |||||||||||||||||    
T  26279964 gagtatcggggcttcaga 26279981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 30947574 - 30947457
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    ||||||||||||| | | ||||| ||| |||| | |||||| |||||||||  | ||||| ||||  ||| ||||||| |||||| |||||| ||||||     
T  30947574 taaatattaattgcccgatactttttcgatacccgtatcggaacgtatcggggcgtatcggtatcgaatacgtgtcggatacgatacttcaccatttttg 30947475  T
Q  176 aagtatcggggcttcaga 193  Q
     |||||||||||||||||    
T  30947474 tagtatcggggcttcaga 30947457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 37245380 - 37245442
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||| ||||||||| ||||||| |||||| |||||| ||||||  |||||||||||||||||    
T  37245380 tatcggtatcagatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcaga 37245442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 19928336 - 19928414
Alignment:
Q  111 tatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggctt 189  Q
    |||||||| |||||||  | ||||| |||| |||| ||||||| |||||| |||||| ||||||  |||||||||||||    
T  19928336 tatcgggatgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggctt 19928414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 45280775 - 45280729
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgta 122  Q
    ||||||||||||||| | ||||||| |||||||| ||||||||||||    
T  45280775 taaatattaattgaccgatacttctccaatacgcgtatcgggacgta 45280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 30947655 - 30947607
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatc 124  Q
    ||||||||||||| ||| ||||||| | |||||| ||||||||||||||    
T  30947655 taaatattaattgtctgatacttctccgatacgcgtatcgggacgtatc 30947607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 39674163 - 39674089
Alignment:
Q  119 cgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    |||||||| |||||||| ||||  ||| ||||||| |||||| |||||| |||||| ||||||||||||||||||    
T  39674163 cgtatcgggacatatcggtatcgaatacgtgtcggatacgatacttcaccatttttgaagtatcggggcttcaga 39674089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 53363108 - 53363198
Alignment:
Q  103 aatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||||| ||||||||||||||||    ||||| |||||||||  |||||| |||||| |||||| ||||||  |||||||||||||||||    
T  53363108 aatacgcgtatcgggacgtatcggggtgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcaga 53363198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 4533489 - 4533372
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    ||||||||||||| | | ||||| | | |||| | |||||| |||||||||  | ||||| ||||||||| ||||||| |||||| |||||| |||||      
T  4533489 taaatattaattgcccgatacttttccgatacccgtatcggaacgtatcggagcgtatcggtatcagatacgtgtcggatacgatacttcaccattttcg 4533390  T
Q  176 aagtatcggggcttcaga 193  Q
    |||||||| |||||||||    
T  4533389 aagtatcgcggcttcaga 4533372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 39579878 - 39579804
Alignment:
Q  119 cgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    |||||||| || ||||  ||||||||| ||||| | |||||| |||||| ||||||  |||||||||||||||||    
T  39579878 cgtatcgggacgtatcagtatcagatacgtgtcagatacgatacttcaccatttttggagtatcggggcttcaga 39579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 53330797 - 53330859
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||| |||||||||  |||||| |||||| |||||| ||||||  |||||||||||||||||    
T  53330797 tatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcaga 53330859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 53334481 - 53334543
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||| |||||||||  |||||| |||||| |||||| ||||||  |||||||||||||||||    
T  53334481 tatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcaga 53334543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 53338158 - 53338220
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||| |||||||||  |||||| |||||| |||||| ||||||  |||||||||||||||||    
T  53338158 tatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcaga 53338220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 39579992 - 39579944
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatc 124  Q
    ||||||||||||| | | ||||||| | |||||||||||||||||||||    
T  39579992 taaatattaattgtccgatacttctccgatacgcatatcgggacgtatc 39579944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 42864331 - 42864251
Alignment:
Q  113 tcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||||||||| ||  | ||||| |||| |||| ||||||| |||||| |||||| ||||||  ||| |||||||||||||    
T  42864331 tcgggacgtattggggcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttggagtttcggggcttcaga 42864251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 38145 - 38225
Alignment:
Q  111 tatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttca 191  Q
    ||||||||||||||||  | ||||| ||||||||| ||||||| |||||| |||||  ||||||  |||||||||||||||    
T  38145 tatcgggacgtatcggggcgtatcggtatcagatacgtgtcggatacgatacttcatcatttttggagtatcggggcttca 38225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 10861889 - 10861951
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||| |||| |||||||||||| |||||| |||||| ||||||  |||||||||||||||||    
T  10861889 tatcggtatcggatatgtgtcggttacgatacttcaccatttttggagtatcggggcttcaga 10861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 20289345 - 20289271
Alignment:
Q  119 cgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    |||||||| || ||||| |||| |||| ||||||| |||||| |||||| ||||||  |||||||||||||||||    
T  20289345 cgtatcgggacgtatcggtatccgatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcaga 20289271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 21075975 - 21075901
Alignment:
Q  119 cgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    |||||||| || ||||| |||| |||| ||||||| |||||| |||||| ||||||  |||||||||||||||||    
T  21075975 cgtatcgggacgtatcggtatccgatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcaga 21075901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 29054579 - 29054467
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgattttta 175  Q
    ||||||||||||| | | ||||| | | |||| | |||||||||||||||   | ||||| |||| |||| ||||||| |||||| |||||| ||||||     
T  29054579 taaatattaattgcccgatacttttccgatacccgtatcgggacgtatcgaggcgtatcg-tatcggatacgtgtcggatacgatacttcaccatttttg 29054481  T
Q  176 aagtatcggggctt 189  Q
     |||||||||||||    
T  29054480 gagtatcggggctt 29054467  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 8862013 - 8861951
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttcaga 193  Q
    ||||| |||| |||| ||||||| |||||| |||||| ||||||  |||||||||||||||||    
T  8862013 tatcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcaga 8861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 11382613 - 11382565
Alignment:
Q  76 taaatattaattgactggtacttcttcaatacgcatatcgggacgtatc 124  Q
    ||||||||||||| | | ||||||||| |||||| ||||||||||||||    
T  11382613 taaatattaattgtccgatacttcttcgatacgcgtatcgggacgtatc 11382565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 563352 - 563410
Alignment:
Q  131 tatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggctt 189  Q
    ||||| |||| |||||||||| | ||||||||||| ||||||||  |||||||||||||    
T  563352 tatcggtatcggatatgtgtcagatacgattcttcgcgatttttggagtatcggggctt 563410  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 6665739 - 6665623
Alignment:
Q  77 aaatattaattgactggtacttcttcaatacgcatatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaa 176  Q
    ||||||||||||   | ||||||| | |||||| ||| ||||||||||||  | ||||| ||||  ||| |||||||  ||||| |||||| |||||       
T  6665739 aaatattaattgctcgatacttctccgatacgcgtattgggacgtatcggggcgtatcggtatcgaatacgtgtcggacacgatccttcaccattttcgg 6665640  T
Q  177 agtatcggggcttcaga 193  Q
    |||||||||||||||||    
T  6665639 agtatcggggcttcaga 6665623  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 46398188 - 46398268
Alignment:
Q  111 tatcgggacgtatcggtacatatcgatatcagatatgtgtcgggtacgattcttcacgatttttaaagtatcggggcttca 191  Q
    |||||| |||||||||  | ||||| ||||||||| |||| || |||||| || ||| ||||||  |||||||||||||||    
T  46398188 tatcggaacgtatcggagcgtatcggtatcagatacgtgttggatacgatactacaccatttttggagtatcggggcttca 46398268  T

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