View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4497_high_6 (Length: 254)
Name: NF4497_high_6
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497_high_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 4568423 - 4568185
Alignment:
| Q |
16 |
gggccatctaaaaatacattcggctagctaaaaatgaagcaaacaatgcagttaatatcccaccccgaaatacagtgatttatcaggtactacccatgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4568423 |
gggccatctaaaaatacattcggctagctaaaaatgaagcaaacaatgcagttaatatcccaccccgaaatacagtgatttatcaggtactacccatgca |
4568324 |
T |
|
| Q |
116 |
aaccccataagttaagtattcaaattggtaggggtagaaagaagacatgttgtggttaataaagttgagcgaggaggacttgtgagtgaggaagaggaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4568323 |
aaccccataagttaagtattcaaattggcaggggtagaaagaagacatgttgtggttaataaagttgagcgaggaggacttgtgagtgaggaagaggaga |
4568224 |
T |
|
| Q |
216 |
aggatacgaagaaaaatgaaatcgaggatgaaagtgaac |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4568223 |
aggatacgaagaaaaatgaaatcgaggatgaaagtgaac |
4568185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University