View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4497_high_8 (Length: 247)
Name: NF4497_high_8
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43961346 - 43961119
Alignment:
| Q |
1 |
tgatataaaaatcagtcaaagttgctaccatccacctgagtcggatgaaaaataatactaagtactacattgttttctgttnnnnnnncaagtgtcttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43961346 |
tgatataaaaatcagtcaaagttgctaccatccacctgagtcggatgaaaaataatactaagtactacattgttttctgttaaaaaaacaagtgtcttga |
43961247 |
T |
|
| Q |
101 |
tcatgtagttgacattcaattaacgttgtaagagaaagagagattacggagt-nnnnnnntgtttgcgaaaggggggaccatcgattaagagagcgcaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43961246 |
tcatgtagttgacattcaattaacgttgtaagag--agagagattacggagtaaaaaaaatgtttgcgaaaggggggaccatcgattaagagagcgcaaa |
43961149 |
T |
|
| Q |
200 |
gaagagtagtaagcatgagagctccataag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43961148 |
gaagagtagtaagcatgagagctccataag |
43961119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University