View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4497_low_11 (Length: 250)

Name: NF4497_low_11
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4497_low_11
NF4497_low_11
[»] chr5 (5 HSPs)
chr5 (1-240)||(40898391-40898630)
chr5 (96-140)||(39030569-39030613)
chr5 (95-141)||(34252722-34252768)
chr5 (99-144)||(42324943-42324988)
chr5 (99-155)||(26730117-26730173)
[»] chr2 (8 HSPs)
chr2 (95-141)||(10459271-10459317)
chr2 (96-141)||(31469076-31469121)
chr2 (97-141)||(33829394-33829438)
chr2 (95-141)||(17437185-17437231)
chr2 (96-134)||(35693930-35693968)
chr2 (95-140)||(2884262-2884307)
chr2 (95-148)||(16180494-16180547)
chr2 (95-155)||(7932734-7932794)
[»] chr8 (2 HSPs)
chr8 (95-140)||(9548108-9548153)
chr8 (95-144)||(29111018-29111067)
[»] chr1 (4 HSPs)
chr1 (95-140)||(47543605-47543650)
chr1 (96-140)||(3739874-3739918)
chr1 (99-141)||(35310315-35310357)
chr1 (97-141)||(3739819-3739863)
[»] scaffold0093 (1 HSPs)
scaffold0093 (102-150)||(21594-21642)
[»] chr7 (2 HSPs)
chr7 (95-146)||(44816467-44816518)
chr7 (96-136)||(16866461-16866501)
[»] chr4 (5 HSPs)
chr4 (95-140)||(30848651-30848696)
chr4 (96-141)||(55827301-55827346)
chr4 (100-144)||(23151594-23151638)
chr4 (100-144)||(24980689-24980733)
chr4 (95-139)||(54235281-54235325)
[»] chr3 (1 HSPs)
chr3 (99-140)||(46829105-46829146)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40898630 - 40898391
Alignment:
Q  1 atcacacttgtgtagaatgctcaggacatcctggatgaattcaatcacatccttatctgctaaccataacgttactccaaaacatcgttttttcgaacca 100  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40898630 atcacacttgtgtagaatgccagggacatcctggatgaattcaatcacatccttatctgctaatcataacgttactccaaaacatcgttttttcgaacca 40898531  T
Q  101 aatacaataatttttgttgaccaatttttgattatattttgagatggagaaaatatgaacttaacttatgcttaacacattttagtagattgtgatgtga 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40898530 aatacaataatttttattgaccaatttttgattatattttgagatggagaaagtatgaacttaacttatgcttaacacattttagtagattgtgatgtga 40898431  T
Q  201 ataaggtatagctcttatcattaccaactcctgtcctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40898430 ataaggtatagctcttatcattaccaactcctgtcctatg 40898391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 39030613 - 39030569
Alignment:
Q  96 aaccaaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||    
T  39030613 aaccaaatacattaacttttgttgaccaatttttgcttatatttt 39030569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 34252768 - 34252722
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    |||||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  34252768 gaaccaaatacattaacttttgttgaccaatttttgcttacattttg 34252722  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 42324943 - 42324988
Alignment:
Q  99 caaatacaataatttttgttgaccaatttttgattatattttgaga 144  Q
    |||||||| ||| ||||||||||||||||||  |||||||||||||    
T  42324943 caaatacattaacttttgttgaccaatttttacttatattttgaga 42324988  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 26730117 - 26730173
Alignment:
Q  99 caaatacaataatttttgttgaccaatttttgattatattttgagatggagaaaata 155  Q
    |||||||| ||| ||||||| ||||||||||   |||||||| ||||||||||||||    
T  26730117 caaatacattaacttttgttaaccaatttttatctatattttaagatggagaaaata 26730173  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 10459317 - 10459271
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  10459317 gaaccaaatacattaacttttgttgaccaatttttgcttatattttg 10459271  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 31469121 - 31469076
Alignment:
Q  96 aaccaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  31469121 aaccaaatacattaacttttgttgaccaatttttgcttatattttg 31469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 33829438 - 33829394
Alignment:
Q  97 accaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||    
T  33829438 accaaatatattaatttttgttgaccaatttttgtttatattttg 33829394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 17437185 - 17437231
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    |||| ||||||| |||||||||||||| |||||||| ||||||||||    
T  17437185 gaactaaatacattaatttttgttgacaaatttttgtttatattttg 17437231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 35693968 - 35693930
Alignment:
Q  96 aaccaaatacaataatttttgttgaccaatttttgatta 134  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  35693968 aaccaaatacattaatttttattgaccaatttttgatta 35693930  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 2884307 - 2884262
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    |||||||||||| |||||||||||||| |||||||  |||||||||    
T  2884307 gaaccaaatacattaatttttgttgacaaatttttacttatatttt 2884262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 16180494 - 16180547
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatgga 148  Q
    |||||||||||| ||| ||||||||||||| ||||  |||||||||| ||||||    
T  16180494 gaaccaaatacattaacttttgttgaccaaattttacttatattttgggatgga 16180547  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 7932794 - 7932734
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatggagaaaata 155  Q
    |||||||||||  ||| |||||||||| |||||||| ||||||||| ||| | ||||||||    
T  7932794 gaaccaaatacgttaacttttgttgactaatttttgcttatattttaagacgaagaaaata 7932734  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 9548108 - 9548153
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  9548108 gaaccaaatataataatttttgttgaacaatttttgtttatatttt 9548153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 29111018 - 29111067
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttgaga 144  Q
    |||||||||||| ||| ||| ||||| ||||||||| |||||||||||||    
T  29111018 gaaccaaatacattaagtttcgttgatcaatttttgtttatattttgaga 29111067  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 47543650 - 47543605
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    ||||||||| || |||||||||||||||||||||| ||||||||||    
T  47543650 gaaccaaattcattaatttttgttgaccaattttttattatatttt 47543605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 3739874 - 3739918
Alignment:
Q  96 aaccaaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||    
T  3739874 aaccaaatacattaacttttgttgaccaatttttgcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 35310315 - 35310357
Alignment:
Q  99 caaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    |||||||| ||||||||||||||||||||||  ||||||||||    
T  35310315 caaatacattaatttttgttgaccaatttttacttatattttg 35310357  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 3739863 - 3739819
Alignment:
Q  97 accaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    |||||||||| ||| ||| ||||||||||||||| ||||||||||    
T  3739863 accaaatacattaactttcgttgaccaatttttgcttatattttg 3739819  T

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Target: scaffold0093 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 21594 - 21642
Alignment:
Q  102 atacaataatttttgttgaccaatttttgattatattttgagatggaga 150  Q
    ||||| |||||||||||||||| |||||| ||||||||| |||||||||    
T  21594 atacattaatttttgttgaccactttttgtttatattttaagatggaga 21642  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 44816518 - 44816467
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattttgagatg 146  Q
    |||||||||||| ||| |||||||| |||||||||| ||| |||||||||||    
T  44816518 gaaccaaatacattaacttttgttggccaatttttgtttacattttgagatg 44816467  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 16866461 - 16866501
Alignment:
Q  96 aaccaaatacaataatttttgttgaccaatttttgattata 136  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  16866461 aaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 30848651 - 30848696
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    |||| ||||||| ||||||||||||||||||||||| ||| |||||    
T  30848651 gaacaaaatacattaatttttgttgaccaatttttgcttacatttt 30848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 55827301 - 55827346
Alignment:
Q  96 aaccaaatacaataatttttgttgaccaatttttgattatattttg 141  Q
    ||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  55827301 aaccaaatatattaacttttgttgaccaatttttgcttatattttg 55827346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 23151594 - 23151638
Alignment:
Q  100 aaatacaataatttttgttgaccaatttttgattatattttgaga 144  Q
    ||||||| ||||||||||||| ||||||||  |||||||||||||    
T  23151594 aaatacattaatttttgttgatcaatttttctttatattttgaga 23151638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 24980689 - 24980733
Alignment:
Q  100 aaatacaataatttttgttgaccaatttttgattatattttgaga 144  Q
    ||||||| |||||||||||||| |||||||| ||| |||||||||    
T  24980689 aaatacattaatttttgttgacaaatttttgcttacattttgaga 24980733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 54235281 - 54235325
Alignment:
Q  95 gaaccaaatacaataatttttgttgaccaatttttgattatattt 139  Q
    |||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  54235281 gaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 46829105 - 46829146
Alignment:
Q  99 caaatacaataatttttgttgaccaatttttgattatatttt 140  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  46829105 caaatacattaacttttgttgaccaatttttgcttatatttt 46829146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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