View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4497_low_13 (Length: 225)
Name: NF4497_low_13
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 9639990 - 9640176
Alignment:
| Q |
17 |
cacaacgatggatactatcatatataatccacaacatagagacaatgaagctgcaattcctattggcaaatctctctgaggatttttcacctgttaaatc |
116 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639990 |
cacaacaatggatactatcatatacaatccacaacatagtgacaatgatgctgcaattcctattggcaaatctctctgaggatttttcacctgttaaatc |
9640089 |
T |
|
| Q |
117 |
aaagtaaaacactattagacagtttgaacatactctcaaggtttttgatgtgctgcgatcactttgcggctgcgtcatgcatctgtg |
203 |
Q |
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| T |
9640090 |
aaagtaaaacactattagacagtttgaacatactctcaaggtttttgatgtgctgcgaccactttgcggctgcgtcatgcatctgtg |
9640176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 9650042 - 9650199
Alignment:
| Q |
17 |
cacaacgatggatactatcatatataatccacaacatagagacaatgaagctgcaattcctattggcaaatctctctgaggatttttcacctgttaaatc |
116 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9650042 |
cacaacaatggatactatcatatacaatccacaacatagtgacaatgaagctgcaattcctagtggcaaatctctctgaggatttttcacctgttaaatc |
9650141 |
T |
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| Q |
117 |
aaagtaaaacactattagacagtttgaacatactctcaaggtttttgatgtgctgcga |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9650142 |
aaagtaaaacactattagacagtttgaacatactctcaaggtttttgatgtgctgcga |
9650199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 9615391 - 9615530
Alignment:
| Q |
18 |
acaacgatggatactatcatatataatccacaacatagagacaatgaagctgcaattcctattggcaaatctctctgaggatttttcacctgttaaatca |
117 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
9615391 |
acaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattccaattggcaaatctctttgaggatttttcacctgttagatca |
9615490 |
T |
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| Q |
118 |
aagtaaaacactattagacagtttgaacatactctcaaggtt |
159 |
Q |
| |
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|||||||||||||||||| |||||| || |||||||||||| |
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| T |
9615491 |
aagtaaaacactattagaaagtttggac--actctcaaggtt |
9615530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 9656059 - 9656182
Alignment:
| Q |
17 |
cacaacgatggatactatcatatataatccacaacatagagacaatgaagctgcaattcctattggcaaatctctctgaggatttttcacctgttaaatc |
116 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
9656059 |
cacaacaatggatactatcatatacaatccacaacatagtgacaatgaagctgcaattcctagtggcaaatctctctgaggatttttcacctgttagatc |
9656158 |
T |
|
| Q |
117 |
aaagtaaaacactattagacagtt |
140 |
Q |
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||||| |||| |||||||| |||| |
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| T |
9656159 |
aaagttaaacgctattagaaagtt |
9656182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 9629886 - 9629996
Alignment:
| Q |
17 |
cacaacgatggatactatcatatataatccacaacatagagacaatgaagctgcaattcctattggcaaatctctctgaggatttttcacctgttaaatc |
116 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
9629886 |
cacaacaatggatactatcatatacaatccacaacatagagacaatgaagctgcaattcctattggcaaatctctttgaggatttttcacctgtt-gatc |
9629984 |
T |
|
| Q |
117 |
aaagtaaaacac |
128 |
Q |
| |
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| |||||||||| |
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| T |
9629985 |
atagtaaaacac |
9629996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 33643756 - 33643681
Alignment:
| Q |
35 |
catatataatccacaacatagagacaatgaagctgcaattcctattggcaaatctctctgaggatttttcacctgt |
110 |
Q |
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|||||| | ||||||||||||| ||| |||||| |||| |||| ||||||||||| |||||||||||||||||| |
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| T |
33643756 |
catatacattccacaacatagaaacagtgaagcaccaatgcctagtggcaaatctcgttgaggatttttcacctgt |
33643681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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