View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4497_low_3 (Length: 365)
Name: NF4497_low_3
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 54986887 - 54986562
Alignment:
| Q |
19 |
aaatatagttttatttttgacacacgtgcgcgcacgcacatgttgcacatgtatatgtaaaatgaacgaacataaaaaatagtgaatggttatacttaat |
118 |
Q |
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| T |
54986887 |
aaatatagttttattgttgacacacgtgcgcg-----------tgcacatgtatatataaaatgaacgagcataaaaaatagtgaatggttatacttaat |
54986799 |
T |
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| Q |
119 |
aagaaaacaaaaatagaaggaaaaaggaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattgg |
218 |
Q |
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| T |
54986798 |
aagaaaacaaaaatagaaggaaaa-ggaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattgg |
54986700 |
T |
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| Q |
219 |
tgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacatataa |
318 |
Q |
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| T |
54986699 |
tgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacatataa |
54986600 |
T |
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| Q |
319 |
gagacttgattgtacaagtgatagaacacactctgtgc |
356 |
Q |
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| T |
54986599 |
gagacttgattgtacaagtgatagaacacactctgtgc |
54986562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 145 - 350
Target Start/End: Complemental strand, 7884096 - 7883891
Alignment:
| Q |
145 |
gaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagaga |
244 |
Q |
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| T |
7884096 |
gaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagataatgatggaagaga |
7883997 |
T |
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| Q |
245 |
caataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacatataagagacttgattgtacaagtgatagaa |
344 |
Q |
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| T |
7883996 |
ctattacagaaattctcttcattgtatttcctatgctaaatgttaagggagaaatctgatcaagagacatgtatgacacttgattatataaatggtagaa |
7883897 |
T |
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| Q |
345 |
cacact |
350 |
Q |
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| T |
7883896 |
cacact |
7883891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 353
Target Start/End: Complemental strand, 18397862 - 18397690
Alignment:
| Q |
181 |
gcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgc |
280 |
Q |
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| T |
18397862 |
gcaattgcggctccaagagcattgacaggctgaattggtgtatggaagatgataattgaagatactatgacagatatacgtttcatggtgtttccaatgc |
18397763 |
T |
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| Q |
281 |
taaatgttaatggagaaatctgatccagagacatataagagacttgattgtacaagtgatagaacacactctg |
353 |
Q |
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| T |
18397762 |
taaatgttaggggagagatctcatccaacgacatgtaagacacctgattgtatagatgatagaatatactctg |
18397690 |
T |
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