View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4497_low_4 (Length: 335)

Name: NF4497_low_4
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4497_low_4
NF4497_low_4
[»] chr2 (3 HSPs)
chr2 (77-247)||(13043664-13043834)
chr2 (88-228)||(29081115-29081254)
chr2 (269-315)||(13043856-13043902)
[»] chr4 (1 HSPs)
chr4 (83-215)||(26261246-26261376)
[»] chr8 (2 HSPs)
chr8 (77-223)||(44718416-44718561)
chr8 (129-228)||(3046577-3046675)
[»] chr5 (3 HSPs)
chr5 (129-228)||(6665871-6665969)
chr5 (139-228)||(32659083-32659171)
chr5 (129-228)||(8871443-8871541)
[»] chr7 (7 HSPs)
chr7 (130-223)||(45280951-45281044)
chr7 (115-215)||(26244870-26244970)
chr7 (129-230)||(22205112-22205212)
chr7 (129-230)||(22229527-22229627)
chr7 (271-315)||(22205248-22205292)
chr7 (271-315)||(22229447-22229491)
chr7 (270-310)||(45280854-45280894)
[»] chr6 (2 HSPs)
chr6 (83-155)||(9150059-9150131)
chr6 (136-228)||(21112287-21112378)
[»] chr3 (6 HSPs)
chr3 (129-228)||(22976562-22976659)
chr3 (136-228)||(959034-959125)
chr3 (136-228)||(25041537-25041629)
chr3 (129-228)||(42864469-42864567)
chr3 (270-315)||(30551782-30551827)
chr3 (173-228)||(29359931-29359984)
[»] chr1 (3 HSPs)
chr1 (136-228)||(33368977-33369067)
chr1 (270-315)||(22150621-22150666)
chr1 (88-132)||(29096476-29096520)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 13043664 - 13043834
Alignment:
Q  77 ttctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||    
T  13043664 ttctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtgataatggttagaaaagggaataactatcgcttagcggt 13043763  T
Q  177 gacgaggaactctagtttttgggggttagaagagacaatatgtttttcatagtgatgcccgtctctatgta 247  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13043764 gacgaggaaccctagtttttgggggttagaagagacaatatgtttttcatagtgctgcccgtctttatgta 13043834  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 29081254 - 29081115
Alignment:
Q  88 tgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaact 187  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||  ||  |||||||||||||||     
T  29081254 tgttgatggaggcaatcaatgatgttgatgttgagattgggtcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaacc 29081155  T
Q  188 ctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||| ||||  ||| |||||||||||||||||||||||||||    
T  29081154 cta-ttttctgggattagaagagacaatatgtttttcatag 29081115  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 13043856 - 13043902
Alignment:
Q  269 aaaaaggaaatatgtaagaaagaagtatcgatgtcaaagtataagtt 315  Q
    |||||||||||||||||| |||||||||| |||||| ||||||||||    
T  13043856 aaaaaggaaatatgtaaggaagaagtatcaatgtcagagtataagtt 13043902  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 26261376 - 26261246
Alignment:
Q  83 ggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgag 182  Q
    |||| ||||||||||| |||| | ||||||  |||||||||||| | |||||||||||||||||||||| |||||||| ||||  ||  |||||||||||    
T  26261376 ggaggtgttgatggaggcaatcagtgatgcagatgttgagattgaggcaattggtggtaatggttagaagagggaatagctatagctcggtggtgacgag 26261277  T
Q  183 gaactctagtttttgggggttagaagagacaat 215  Q
     |||||||  |||| ||||||||||||||||||    
T  26261276 aaactcta--tttttggggttagaagagacaat 26261246  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 44718416 - 44718561
Alignment:
Q  77 ttctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtgg- 175  Q
    |||| ||||| ||||||||||| |||| | ||||||| |||||||||||  || ||||| |||||| |||||||| ||| ||||||||||  | |||||     
T  44718416 ttctctggaggtgttgatggaggcaatcattgatgctgatgttgagattcagttaattgatggtaaaggttagaagaggaaataactatcgttcagtggt 44718515  T
Q  176 tgacgaggaactctagtttttgggggttagaagagacaatatgttttt 223  Q
    |||| |||||| ||| ||||| ||||||||||||||||| ||||||||    
T  44718516 tgacaaggaacccta-ttttttggggttagaagagacaa-atgttttt 44718561  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 3046577 - 3046675
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||||||||||||||||||||| ||||||||  ||||  |  ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  3046577 tcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaacccta-tttttttgggttagaagagacaatatgtttttgatag 3046675  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 6665969 - 6665871
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||||||||||||||||||||| ||||||||  |||| ||  ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  6665969 tcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaacccta-tttttttgggttagaagagacaatatgtttttgatag 6665871  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 32659171 - 32659083
Alignment:
Q  139 gtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||||| ||||| | |||||| ||||| ||  ||||||||||| ||| |||  |||||||| |||||||||||||||||||||| ||||    
T  32659171 gtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaaccctatattttgggg-ttagaagagacaatatgtttttgatag 32659083  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 8871541 - 8871443
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    |||||| |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  8871541 tcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 8871443  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 45281044 - 45280951
Alignment:
Q  130 caattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgttttt 223  Q
    ||||||||| || ||||||||| |||||||||||||| ||  ||||||| ||| ||| ||| |||||  |||||||||||||||||||||||||    
T  45281044 caattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaaccctattttttttgggttagaagagacaatatgttttt 45280951  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 26244870 - 26244970
Alignment:
Q  115 atgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaa 214  Q
    |||||||||||| | |||| |||||||||||| | || || ||||||| || | |||||||||| ||| ||| ||| ||||| |||||| ||||||||||    
T  26244870 atgttgagattgaggcaatcggtggtaatggtcaaaagagagaataacgatttgttagtggtgatgagaaaccctacttttttggggttggaagagacaa 26244969  T
Q  215 t 215  Q
    |    
T  26244970 t 26244970  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 22205112 - 22205212
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||| || |||||||||||||| |||||||| ||||| ||   |||||||||| ||| ||| |||||  ||| |||||||||||| |||||||| ||||    
T  22205112 tcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta-tttttttgggatagaagagacaaaatgttttttatag 22205210  T
Q  229 tg 230  Q
    ||    
T  22205211 tg 22205212  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 22229627 - 22229527
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||| || |||||||||||||| |||||||| ||||| ||   |||||||||| ||| ||| |||||  ||| |||||||||||| |||||||| ||||    
T  22229627 tcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta-tttttttgggatagaagagacaaaatgttttttatag 22229529  T
Q  229 tg 230  Q
    ||    
T  22229528 tg 22229527  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 22205248 - 22205292
Alignment:
Q  271 aaaggaaatatgtaagaaagaagtatcgatgtcaaagtataagtt 315  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||    
T  22205248 aaaggaaatatgtaagacagaagtatcggtgtcgaagtataagtt 22205292  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 22229491 - 22229447
Alignment:
Q  271 aaaggaaatatgtaagaaagaagtatcgatgtcaaagtataagtt 315  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||    
T  22229491 aaaggaaatatgtaagacagaagtatcggtgtcgaagtataagtt 22229447  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 45280894 - 45280854
Alignment:
Q  270 aaaaggaaatatgtaagaaagaagtatcgatgtcaaagtat 310  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  45280894 aaaaggaaatatgtaagaaagacgtatcggtgtcaaagtat 45280854  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 9150059 - 9150131
Alignment:
Q  83 ggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagg 155  Q
    |||| ||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  9150059 ggaggtgttgatggaggcaatcagtgatgctgatgttgagattgggtcaatcggtggtaatggatagaaaagg 9150131  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 21112378 - 21112287
Alignment:
Q  136 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||  || ||||||||||||||||| |||| ||||    
T  21112378 gtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttagg-ttagaagagacaatatgattttgatag 21112287  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 22976562 - 22976659
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||| ||||||||||||||||| ||| |||| ||||| ||  ||||||||||| ||| ||| |||||  |||||| |||||||||||||||||| ||||    
T  22976562 tcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaaccctatttttt--gggttaaaagagacaatatgtttttgatag 22976659  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 959125 - 959034
Alignment:
Q  136 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    |||||||||||||||| || ||||| |||| |||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  959125 gtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 959034  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 25041629 - 25041537
Alignment:
Q  136 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    ||||||||||||| ||||| ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  25041629 gtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccctattttttttaggttagaagagacaatatgattttgatag 25041537  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 42864567 - 42864469
Alignment:
Q  129 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    |||||| |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  42864567 tcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 42864469  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 30551827 - 30551782
Alignment:
Q  270 aaaaggaaatatgtaagaaagaagtatcgatgtcaaagtataagtt 315  Q
    |||||| ||||||||||| |||||||||| ||||| ||||||||||    
T  30551827 aaaagggaatatgtaagacagaagtatcggtgtcagagtataagtt 30551782  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 29359984 - 29359931
Alignment:
Q  173 tggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    |||||||||| ||| ||| ||||||||  |||||||||||||||||||||| ||||    
T  29359984 tggtgacgagaaacactattttttggg--ttagaagagacaatatgtttttgatag 29359931  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 33369067 - 33368977
Alignment:
Q  136 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 228  Q
    |||||||||||||||| |||||||| ||||| ||  ||||||||||| ||| | | |||||  ||||||||||||| ||||||||||| ||||    
T  33369067 gtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaacccaatttttt--gggttagaagagataatatgtttttgatag 33368977  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 22150621 - 22150666
Alignment:
Q  270 aaaaggaaatatgtaagaaagaagtatcgatgtcaaagtataagtt 315  Q
    |||||||||||||||||| |||||||||| ||||  ||||||||||    
T  22150621 aaaaggaaatatgtaagacagaagtatcggtgtcggagtataagtt 22150666  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 29096520 - 29096476
Alignment:
Q  88 tgttgatggagacaattaatgatgctaatgttgagattgggtcaa 132  Q
    ||||||||||| |||| | ||||||| ||||||||||||||||||    
T  29096520 tgttgatggaggcaatcagtgatgctgatgttgagattgggtcaa 29096476  T

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