View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4497_low_6 (Length: 317)
Name: NF4497_low_6
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 38004824 - 38005056
Alignment:
| Q |
3 |
gaaatcttacggaatgatgataacgtctgataagaacaaaagtaaatttaacatccataattattctcaattacaatatctgctgaannnnnnngttgga |
102 |
Q |
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| T |
38004824 |
gaaatcttacggaatgatgataacgtctgataagaacaaaagtaaatttaacatccataactattctcaattacaatatctgctgaatttttttgttgga |
38004923 |
T |
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| Q |
103 |
accaaaagtgaaatttcaccacaatgaaactttgaaaaccaattatattgactcccactaaaataaaattcaattgtcaattaacttgaattagaatcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38004924 |
accaaaagtgaaatttcaccacaatgaaactttgaaaaccaattatattgactcccactaaaataaaattcaattgtcaattaacttgaattagaatcat |
38005023 |
T |
|
| Q |
203 |
cgatccccacaaatactcaatccatcatgcctc |
235 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
38005024 |
cgatccccaaaaatactcaatccatcatgcctc |
38005056 |
T |
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