View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4497_low_8 (Length: 275)
Name: NF4497_low_8
Description: NF4497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4497_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 13788148 - 13787897
Alignment:
| Q |
25 |
tagtagtattactcgtgcaatatgcatggaataaaatatactaaaataaaatccatttcagtcatcatcactagtgtgtaaaagataataaattcaaaac |
124 |
Q |
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| T |
13788148 |
tagtagtattactcgtgcaatatgcatggaataaaatatactaaaataaaatccatttcagtcatcatcactagtgtgtaaaagataataaattcaaaac |
13788049 |
T |
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| Q |
125 |
tgaatagtttttagtcatgtataattatctttgttccttataattttccttttaatttaatatttctaaaatttgtaggttttgttcacgactccctata |
224 |
Q |
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| T |
13788048 |
tgaatagtttttagtcatgtatgattatctttgttccttataattttccttttaatgtaatatttctaaaatttgtatgtattgttcacga-ttcctata |
13787950 |
T |
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| Q |
225 |
aaatgagagaatttcct-ataattttcc-tttaatgtaatatttctaaaattt |
275 |
Q |
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| T |
13787949 |
aaatgagagaacttcctaataattttccttttaatgaaatatttttaaaattt |
13787897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 13787869 - 13787801
Alignment:
| Q |
168 |
ttttccttttaatttaatatttctaaaatttgtaggttttgttcacgactccctataaaatgagagaatt |
237 |
Q |
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| T |
13787869 |
ttttccttttaatgtaatatttctaaaatttgtaagtattgttcacg-ttttctataaaatgagagaatt |
13787801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 13787937 - 13787872
Alignment:
| Q |
158 |
ttccttataattttccttttaatttaatatttctaaaatttgtaggttttgttcacgactccctat |
223 |
Q |
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| T |
13787937 |
ttcctaataattttccttttaatgaaatatttttaaaatttttaagtattgttcacgattccctat |
13787872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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