View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498-Insertion-2 (Length: 55)
Name: NF4498-Insertion-2
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498-Insertion-2 |
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| [»] chr3 (6 HSPs) |
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| [»] scaffold0654 (1 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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| [»] scaffold0308 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold1840 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 1e-18; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 9657291 - 9657341
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgaccca |
55 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657291 |
acacgaaccatcaatgattgtgctatacattaccacgtcagtgttgaccca |
9657341 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 9648302 - 9648352
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgaccca |
55 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9648302 |
acacaaactatcaatgagtgtgctatacattaccacgtcagtgttgaccca |
9648352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 33997480 - 33997430
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgaccca |
55 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
33997480 |
acacaaactatcaatgattgtgctatacattaccacgtcagcgttaaccca |
33997430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 16350485 - 16350437
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
53 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
16350485 |
acacaaaccatcaatgattgtgctatacattaccacattggtgttgacc |
16350437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 9628775 - 9628825
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgaccca |
55 |
Q |
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|||||||| |||||| ||||| ||||||||||||| ||||||||||||||| |
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| T |
9628775 |
acacaaactatcaattattgtcctatacattaccaagtcagtgttgaccca |
9628825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 11990747 - 11990712
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccac |
40 |
Q |
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|||||||| ||||||||||||| ||||||||||||| |
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| T |
11990747 |
acacaaactatcaatgattgtgttatacattaccac |
11990712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 37; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1784 - 1828
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgtt |
49 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1784 |
acacaaactatcaatgattgtgctatacattaccacatcagtgtt |
1828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 37; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 51068 - 51112
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgtt |
49 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
51068 |
acacaaactatcaatgattgtgctatacattaccacatcagtgtt |
51112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 33; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26789 - 26741
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
53 |
Q |
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|||||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
26789 |
acacaaactatcaatgattgtgctatacattaccacattggtgttgacc |
26741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 8430 - 8382
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
53 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| || ||||||||| |
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| T |
8430 |
acacaaactatcgatgattgtgttatacattaccacatcggtgttgacc |
8382 |
T |
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Target: scaffold0014 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 136809 - 136761
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
53 |
Q |
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|||||||| |||||| ||| |||||||||||||||| || ||||||||| |
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| T |
136809 |
acacaaactatcaataattatgctatacattaccacatcggtgttgacc |
136761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 16702582 - 16702630
Alignment:
| Q |
5 |
acacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
53 |
Q |
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|
||||||||||||||||| ||| |||||||||||||| | ||||||||| |
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| T |
16702582 |
acacaaaccatcaatgactgtactatacattaccacattggtgttgacc |
16702630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1840 (Bit Score: 28; Significance: 0.0000002; HSPs: 1)
Name: scaffold1840
Description:
Target: scaffold1840; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 843 - 812
Alignment:
| Q |
6 |
cacaaaccatcaatgattgtgctatacattac |
37 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
843 |
cacaaaccatcaatgattgtactatacattac |
812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 28; Significance: 0.0000002; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 2665 - 2634
Alignment:
| Q |
6 |
cacaaaccatcaatgattgtgctatacattac |
37 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
2665 |
cacaaaccatcaatgattgtactatacattac |
2634 |
T |
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