View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4498_high_1 (Length: 600)

Name: NF4498_high_1
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4498_high_1
NF4498_high_1
[»] chr1 (21 HSPs)
chr1 (116-580)||(51453870-51454317)
chr1 (403-582)||(51478322-51478501)
chr1 (9-113)||(44112679-44112783)
chr1 (9-113)||(45427739-45427843)
chr1 (9-113)||(41065155-41065259)
chr1 (9-113)||(48119630-48119734)
chr1 (9-113)||(35000107-35000211)
chr1 (9-113)||(35003296-35003400)
chr1 (9-113)||(38113189-38113293)
chr1 (9-113)||(38335920-38336024)
chr1 (9-113)||(45705827-45705931)
chr1 (9-113)||(46168385-46168489)
chr1 (9-113)||(45639726-45639830)
chr1 (9-113)||(26585464-26585568)
chr1 (58-113)||(14427349-14427404)
chr1 (27-113)||(43571098-43571184)
chr1 (27-113)||(48498974-48499060)
chr1 (27-115)||(2497574-2497662)
chr1 (27-113)||(5489778-5489864)
chr1 (27-115)||(4401327-4401416)
chr1 (27-115)||(7447826-7447913)
[»] chr8 (22 HSPs)
chr8 (9-113)||(34304790-34304894)
chr8 (9-113)||(35181518-35181622)
chr8 (9-113)||(18066712-18066816)
chr8 (9-115)||(33629987-33630093)
chr8 (9-113)||(16603620-16603724)
chr8 (27-115)||(29800962-29801050)
chr8 (28-116)||(30912575-30912663)
chr8 (27-113)||(42197447-42197533)
chr8 (9-113)||(16358827-16358932)
chr8 (9-61)||(10678146-10678198)
chr8 (27-115)||(20148760-20148848)
chr8 (27-115)||(42295195-42295283)
chr8 (27-115)||(26125635-26125723)
chr8 (27-115)||(42699257-42699345)
chr8 (27-113)||(2546998-2547084)
chr8 (27-113)||(11582768-11582854)
chr8 (27-113)||(29705364-29705450)
chr8 (27-113)||(36743495-36743581)
chr8 (29-113)||(1375544-1375628)
chr8 (27-107)||(31384672-31384752)
chr8 (27-113)||(2165975-2166061)
chr8 (27-113)||(5754905-5754991)
[»] chr3 (22 HSPs)
chr3 (9-113)||(9434126-9434230)
chr3 (9-113)||(34791831-34791935)
chr3 (9-113)||(51757595-51757699)
chr3 (9-113)||(4190259-4190363)
chr3 (9-113)||(10457886-10457990)
chr3 (9-113)||(25996270-25996374)
chr3 (10-113)||(52627972-52628075)
chr3 (27-113)||(40808867-40808953)
chr3 (16-116)||(27748562-27748662)
chr3 (27-113)||(25413683-25413769)
chr3 (27-113)||(42100690-42100776)
chr3 (27-113)||(45126940-45127026)
chr3 (15-113)||(53273684-53273782)
chr3 (27-113)||(24688414-24688500)
chr3 (27-113)||(42394431-42394517)
chr3 (27-113)||(46941055-46941141)
chr3 (27-113)||(54237098-54237184)
chr3 (16-73)||(51249350-51249407)
chr3 (27-115)||(53581870-53581958)
chr3 (27-113)||(36150132-36150218)
chr3 (27-113)||(40480751-40480837)
chr3 (27-113)||(54246160-54246246)
[»] chr2 (24 HSPs)
chr2 (9-113)||(43114559-43114663)
chr2 (9-116)||(11825648-11825755)
chr2 (9-124)||(41281968-41282083)
chr2 (9-113)||(12415454-12415558)
chr2 (9-113)||(12427514-12427618)
chr2 (9-113)||(16803970-16804074)
chr2 (9-113)||(16843252-16843356)
chr2 (9-113)||(18491707-18491811)
chr2 (30-115)||(6518484-6518568)
chr2 (9-113)||(966828-966932)
chr2 (9-109)||(34895735-34895835)
chr2 (9-115)||(4299414-4299520)
chr2 (9-91)||(4451944-4452026)
chr2 (9-93)||(12531657-12531740)
chr2 (16-113)||(34817777-34817874)
chr2 (29-113)||(43335777-43335861)
chr2 (27-113)||(1750416-1750502)
chr2 (27-113)||(4764738-4764824)
chr2 (27-113)||(19047159-19047245)
chr2 (27-113)||(30838634-30838720)
chr2 (27-115)||(43490413-43490501)
chr2 (27-113)||(12302265-12302351)
chr2 (27-113)||(16096749-16096835)
chr2 (16-77)||(13780736-13780797)
[»] chr7 (20 HSPs)
chr7 (9-113)||(40236921-40237025)
chr7 (9-113)||(33384872-33384977)
chr7 (9-113)||(27535225-27535329)
chr7 (9-113)||(31408627-31408731)
chr7 (9-113)||(31513289-31513393)
chr7 (27-115)||(43343636-43343724)
chr7 (27-115)||(44416946-44417034)
chr7 (27-113)||(42972854-42972940)
chr7 (16-115)||(4638200-4638299)
chr7 (27-115)||(10573749-10573837)
chr7 (27-115)||(44326178-44326266)
chr7 (27-113)||(5015397-5015483)
chr7 (27-113)||(35069723-35069809)
chr7 (27-112)||(26898414-26898499)
chr7 (27-113)||(9216304-9216389)
chr7 (27-113)||(24001024-24001110)
chr7 (27-113)||(42538443-42538529)
chr7 (30-113)||(43317445-43317528)
chr7 (16-113)||(24280597-24280694)
chr7 (48-113)||(39998410-39998475)
[»] chr5 (13 HSPs)
chr5 (9-113)||(32473388-32473492)
chr5 (9-113)||(17208076-17208180)
chr5 (9-113)||(30622713-30622816)
chr5 (386-480)||(42431626-42431718)
chr5 (403-480)||(42433365-42433442)
chr5 (27-115)||(5256995-5257083)
chr5 (27-113)||(7617135-7617221)
chr5 (27-113)||(22512307-22512393)
chr5 (27-113)||(33801471-33801557)
chr5 (27-113)||(2614661-2614747)
chr5 (27-113)||(18033984-18034070)
chr5 (27-113)||(41334675-41334761)
chr5 (43-113)||(33855071-33855141)
[»] chr4 (31 HSPs)
chr4 (9-113)||(55272370-55272474)
chr4 (9-113)||(17619146-17619250)
chr4 (9-113)||(32728359-32728463)
chr4 (9-113)||(711962-712066)
chr4 (9-109)||(48435573-48435673)
chr4 (9-115)||(38851513-38851619)
chr4 (9-115)||(35037005-35037111)
chr4 (9-113)||(960864-960968)
chr4 (9-113)||(46827700-46827804)
chr4 (10-115)||(3756242-3756346)
chr4 (27-115)||(27893854-27893942)
chr4 (35-113)||(49229684-49229762)
chr4 (27-115)||(43514698-43514786)
chr4 (27-113)||(27864566-27864652)
chr4 (16-113)||(28988475-28988572)
chr4 (9-79)||(19879990-19880060)
chr4 (27-113)||(27550311-27550397)
chr4 (9-61)||(36004110-36004162)
chr4 (25-113)||(48463460-48463548)
chr4 (16-115)||(41327544-41327643)
chr4 (27-113)||(1771278-1771364)
chr4 (27-113)||(23035982-23036068)
chr4 (27-113)||(33703143-33703229)
chr4 (27-77)||(39631139-39631189)
chr4 (27-113)||(55966358-55966444)
chr4 (28-113)||(28982835-28982920)
chr4 (16-113)||(41847973-41848070)
chr4 (27-115)||(31680902-31680990)
chr4 (27-113)||(41878408-41878494)
chr4 (27-77)||(43949813-43949863)
chr4 (27-113)||(45490325-45490411)
[»] scaffold0100 (1 HSPs)
scaffold0100 (9-113)||(35450-35554)
[»] chr6 (18 HSPs)
chr6 (9-113)||(33242405-33242509)
chr6 (406-524)||(18078747-18078865)
chr6 (9-115)||(27441542-27441648)
chr6 (15-113)||(33253915-33254013)
chr6 (403-481)||(18076829-18076907)
chr6 (27-115)||(24203999-24204087)
chr6 (27-113)||(7367551-7367637)
chr6 (27-113)||(13743233-13743319)
chr6 (27-113)||(13748733-13748819)
chr6 (27-113)||(26670021-26670107)
chr6 (30-115)||(30735982-30736067)
chr6 (9-113)||(31109216-31109320)
chr6 (30-113)||(7273350-7273433)
chr6 (27-113)||(7292749-7292835)
chr6 (27-113)||(9698345-9698431)
chr6 (27-113)||(26466801-26466887)
chr6 (16-113)||(3213402-3213499)
chr6 (16-113)||(30014345-30014442)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-115)||(45713-45819)
[»] scaffold0119 (1 HSPs)
scaffold0119 (27-113)||(687-773)
[»] scaffold0385 (1 HSPs)
scaffold0385 (27-113)||(11253-11339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (27-113)||(112657-112743)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 116 - 580
Target Start/End: Original strand, 51453870 - 51454317
Alignment:
Q  116 cggaaaaaaccttaatgagcaagttatgacttattgctattttagaatcggttttatggaccccactccttacactataccacgctgatgcgatgcctaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                ||||||||||||||    
T  51453870 cggaaaaaaccttaatgagcaagttatgacttattgctattttagaatcggttttatggaccc-actcct----------------gatgcgatgcctaa 51453952  T
Q  216 tacaagtaacaaacattctcaacgttcaggtttctccacctcgccattttcagcagtagcagtagaagtaaacaaacccaaatgcaatgcatgctccata 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51453953 tacaagtaacaaacattctcaacgttcagttttctccacctcgccattttcagcagtagcagtagaagtaaacaaacccaaatgcaatgcatgctccata 51454052  T
Q  316 gctagggttccttcacctcgccattttcatcctctattctatgttaaactaattaatcaaatccctgaaaaacaaaaactccattctctgcatttgaaat 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51454053 gctagggttccttcacctcgccattttcatcctctattctatgttaaactaattaatcaaatccctgaaaaacaaaaactccattctctgcattcgaaat 51454152  T
Q  416 ttcaatggcggaggaagagaacaaccacacagtcacatatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccattcctgatcat 515  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454153 ttcaatggcggaggaagagaacaaccacacagtcacttatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccattcctgatcat 51454252  T
Q  516 gatcatcgagaaacacaacctactgccaatgttggcgcggaaacggtaccgttggaggatggtga 580  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454253 gatcatcaagaaacacaacctactgccaatgttggcgcggaaacggtaccgttggaggatggtga 51454317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 403 - 582
Target Start/End: Original strand, 51478322 - 51478501
Alignment:
Q  403 ctgcatttgaaatttcaatggcggaggaagagaacaaccacacagtcacatatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacc 502  Q
    |||||||||||||||||||||| ||||||||||||||  ||| |||||| |||||||||||||||||||||| ||||||| |||| ||  ||||||||||    
T  51478322 ctgcatttgaaatttcaatggctgaggaagagaacaatgacatagtcacgtatatagtgaaaatcaaagtcatactcaccgtcccggacccagatgaacc 51478421  T
Q  503 cattcctgatcatgatcatcgagaaacacaacctactgccaatgttggcgcggaaacggtaccgttggaggatggtgatg 582  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  51478422 cattcctgatcatgatcatcgagaaacacaacccactgccaatgttggcgcggaaatggtaccgttggaggatggtgatg 51478501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 44112783 - 44112679
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  44112783 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 44112684  T
Q  109 atttt 113  Q
    |||||    
T  44112683 atttt 44112679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 45427739 - 45427843
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | | ||||||||||    
T  45427739 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaac 45427838  T
Q  109 atttt 113  Q
    |||||    
T  45427839 atttt 45427843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 41065259 - 41065155
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||||| || ||||||||||||| | ||||||||||||    
T  41065259 gagaggaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaac 41065160  T
Q  109 atttt 113  Q
    |||||    
T  41065159 atttt 41065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 48119734 - 48119630
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  48119734 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 48119635  T
Q  109 atttt 113  Q
    |||||    
T  48119634 atttt 48119630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 35000107 - 35000211
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||| || ||| ||||||||||||||| ||||| || |||||||| ||||||||||||| | ||||||||||||    
T  35000107 gagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaac 35000206  T
Q  109 atttt 113  Q
    |||||    
T  35000207 atttt 35000211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 35003400 - 35003296
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||  ||||||||||| ||||||||||||| | ||||||||||||    
T  35003400 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 35003301  T
Q  109 atttt 113  Q
    |||||    
T  35003300 atttt 35003296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 38113189 - 38113293
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||  |||||||||  ||||||||||| ||||||||||||| | ||||||| ||||    
T  38113189 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataac 38113288  T
Q  109 atttt 113  Q
    |||||    
T  38113289 atttt 38113293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 38336024 - 38335920
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||   |||||||||  ||||||||||||| | ||||||||||||    
T  38336024 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaac 38335925  T
Q  109 atttt 113  Q
    |||||    
T  38335924 atttt 38335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 45705931 - 45705827
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||  |||||||||||  |||||||||||| | ||||||| ||||    
T  45705931 gagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataac 45705832  T
Q  109 atttt 113  Q
    |||||    
T  45705831 atttt 45705827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 46168489 - 46168385
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||   |||||||||||  | |||||||||| | ||||||||||||    
T  46168489 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaac 46168390  T
Q  109 atttt 113  Q
    |||||    
T  46168389 atttt 46168385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 45639726 - 45639830
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| |||||||||||| |||||||||| ||| ||||| |||  |||||||||||  ||||||||||||   ||||||||||||    
T  45639726 gagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaac 45639825  T
Q  109 atttt 113  Q
    |||||    
T  45639826 atttt 45639830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 26585568 - 26585464
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| ||| |||||||| |||| ||||| ||| |||||||||  ||||||||||  |||||||||||||  |||||||| ||||    
T  26585568 gagatgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaac 26585469  T
Q  109 atttt 113  Q
    |||||    
T  26585468 atttt 26585464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 14427404 - 14427349
Alignment:
Q  58 taatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 14427349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 43571098 - 43571184
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  |||||||||   ||||| || |||| | |||||||||||||||||    
T  43571098 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 48498974 - 48499060
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||||||||| | |||||  | ||||   |||||||||||||||||    
T  48498974 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 48499060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 2497574 - 2497662
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| ||| ||||  |||  ||||||||| |  ||||||| |||||| |||| ||||||||||||||    
T  2497574 tggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttttc 2497662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 5489864 - 5489778
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  5489864 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 5489778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 4401416 - 4401327
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatga-tgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| || ||||| ||||  |||||||||   ||||| || |||| || |||||||||| ||||||||    
T  4401416 tggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttttc 4401327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 7447913 - 7447826
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| ||| |||||| ||  |||| ||||  ||||||||| |  |||| || |||| |||||||||||||||||||||    
T  7447913 tggttgtgagatgaacttatcaaaatatctgtaatacatgg-gtgtacaatgggatgtaggaataaaggatgttcatgtaacatttttc 7447826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 34304894 - 34304790
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  34304894 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaac 34304795  T
Q  109 atttt 113  Q
    |||||    
T  34304794 atttt 34304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 35181622 - 35181518
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  35181622 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 35181523  T
Q  109 atttt 113  Q
    |||||    
T  35181522 atttt 35181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 18066712 - 18066816
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||   ||||||||||  |||||||||||| | ||||||||||||    
T  18066712 gagatgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaac 18066811  T
Q  109 atttt 113  Q
    |||||    
T  18066812 atttt 18066816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 33629987 - 33630093
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||   |||||||||   ||||||||||||| | ||||| ||||||    
T  33629987 gagatgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaac 33630086  T
Q  109 atttttc 115  Q
    |||||||    
T  33630087 atttttc 33630093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 16603620 - 16603724
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||  |||||||||  ||||| ||||  ||||||||||||| | ||| ||||||||    
T  16603620 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaac 16603719  T
Q  109 atttt 113  Q
    |||||    
T  16603720 atttt 16603724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 29800962 - 29801050
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| |  ||||||| |||||| |||| ||||||||||||||    
T  29800962 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 29801050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 30912575 - 30912663
Alignment:
Q  28 ggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttcc 116  Q
    |||||||||||||| ||||||||||  ||||||| ||||| ||||||||| | ||||| || |||| | ||||||||||||||||||||    
T  30912575 ggttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttcc 30912663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 42197447 - 42197533
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||  ||||| |||| | ||||| || |||||| |||||||||||||||||    
T  42197447 tggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacatttt 42197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 16358827 - 16358932
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttc-atgtaa 107  Q
    ||||||||| ||||| ||||||||||||||||| ||| |||||| | | |||||||||   |||||||||| ||||||||||||| | | ||| ||||||    
T  16358827 gagatgaaaaagaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaa 16358926  T
Q  108 catttt 113  Q
    ||||||    
T  16358927 catttt 16358932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10678146 - 10678198
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaat 61  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  10678146 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaat 10678198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 20148848 - 20148760
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| ||||||||  |||| ||||||||| |  ||||||| |||| | |||| ||||||||||||||    
T  20148848 tggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 20148760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 42295283 - 42295195
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| |||||||| ||||  |||||||||   ||||| || |||| | |||||||||||||||||||    
T  42295283 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 42295195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 26125723 - 26125635
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  ||||||| |||| | |||| ||||||||||||||    
T  26125723 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttttc 26125635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 42699345 - 42699257
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||| ||||| ||| |||| ||| | ||||||||| | ||||| || |||| | |||||||||||||||||||    
T  42699345 tggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 42699257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 2547084 - 2546998
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| |||||||| ||||| ||||||||| | |||||  | ||||   |||||||||||||||||    
T  2547084 tggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 2546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 11582854 - 11582768
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  11582854 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 11582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 29705450 - 29705364
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| ||| |||||| |||||||| ||||  ||||||||| | |||||  | |||| | |||||||||||||||||    
T  29705450 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 29705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 36743495 - 36743581
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  36743495 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 36743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 1375628 - 1375544
Alignment:
Q  29 gttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||| || |||||||||| ||||||||  |||  ||||||||| | |||||||| |||| | ||||||||||| |||||    
T  1375628 gttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaatttt 1375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 31384752 - 31384672
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaa 107  Q
    ||||||||||||||| |||||||||| | |||||| ||||  |||||||||||  |||| || |||| | |||||||||||    
T  31384752 tggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 2165975 - 2166061
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||| ||||||||| |||||||||| || ||||| ||||  || |||||| | ||||| || |||||| ||||||||||| |||||    
T  2165975 tggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatatttt 2166061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 5754991 - 5754905
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| ||||||||  |||   |||||||| |  |||| || |||| | |||||||||||||||||    
T  5754991 tggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacatttt 5754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 9434230 - 9434126
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  9434230 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaac 9434131  T
Q  109 atttt 113  Q
    |||||    
T  9434130 atttt 9434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 34791935 - 34791831
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| || |||||||  ||||||||||||| | ||||||||||||    
T  34791935 gagatgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaac 34791836  T
Q  109 atttt 113  Q
    |||||    
T  34791835 atttt 34791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 51757699 - 51757595
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||| | |||| ||||||     
T  51757699 gagatgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaat 51757600  T
Q  109 atttt 113  Q
    |||||    
T  51757599 atttt 51757595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 4190259 - 4190363
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| || ||||| ||| | ||||||||||| ||||||||||||| | ||||||||||||    
T  4190259 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 4190358  T
Q  109 atttt 113  Q
    |||||    
T  4190359 atttt 4190363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 10457886 - 10457990
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||| || |||||||||| ||| |||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  10457886 gagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaac 10457985  T
Q  109 atttt 113  Q
    |||||    
T  10457986 atttt 10457990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 25996374 - 25996270
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||  |||  ||||||||||   |||||||||||| | ||||||||||||    
T  25996374 gagatgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaac 25996275  T
Q  109 atttt 113  Q
    |||||    
T  25996274 atttt 25996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 52627972 - 52628075
Alignment:
Q  10 agatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaaca 109  Q
    |||||||||||||| |||| |||||||||||| |||||||||| | | |||||||||| |||||||||||  |||||||||||| | |||||| ||||||    
T  52627972 agatgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaaca 52628071  T
Q  110 tttt 113  Q
    ||||    
T  52628072 tttt 52628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 40808953 - 40808867
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| | ||||| || |||||| |||| ||||||||||||    
T  40808953 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacatttt 40808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 27748662 - 27748562
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||| ||| ||| ||||||||||||| |||||||||| |||||||| ||| | ||||| |||   |||||||| |||| | |||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttttc 27748563  T
Q  116 c 116  Q
    |    
T  27748562 c 27748562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 25413769 - 25413683
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| |||||||| ||| | ||||||||| | ||||| || |||| | |||||||||||||||||    
T  25413769 tggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 25413683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 42100776 - 42100690
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  |||||||||   ||||| || |||| | |||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 45126940 - 45127026
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| |  ||||||| |||| | |||| ||||||||||||    
T  45126940 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 53273684 - 53273782
Alignment:
Q  15 aaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||| ||| ||||||||||||||||| |||||||||| |||||||| ||||   ||||||||   || || || |||||||||||||| |||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacatttt 53273782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 24688414 - 24688500
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| | |||||  | |||| | |||||||||||||||||    
T  24688414 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 24688500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 42394431 - 42394517
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  42394431 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 42394517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 46941141 - 46941055
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  |||||||||    |||| || |||| | |||||||||||||||||    
T  46941141 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacatttt 46941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 54237184 - 54237098
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  54237184 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 54237098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 51249407 - 51249350
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgta 73  Q
    |||||||| | ||||||||||||||| |||||||||| ||| |||||||||| |||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgta 51249350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 53581870 - 53581958
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| ||| |||||| |||||||| |||    |||||||| | |||||||| ||||   |||||||||||||||||||    
T  53581870 tggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttc 53581958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 36150218 - 36150132
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| ||||| || |||   ||||| ||| | |||||||| |||| | | |||||||||||||||    
T  36150218 tggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacatttt 36150132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 40480837 - 40480751
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||    |||||||| | |  ||||| |||| | |||||||||||||||||    
T  40480837 tggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacatttt 40480751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 54246160 - 54246246
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| || ||||| |||   ||||||||| | ||||| || |||| | |||||||||||||||||    
T  54246160 tggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 54246246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 43114663 - 43114559
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  43114663 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 43114564  T
Q  109 atttt 113  Q
    |||||    
T  43114563 atttt 43114559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 11825648 - 11825755
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  11825648 gagatgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 11825747  T
Q  109 atttttcc 116  Q
    ||||||||    
T  11825748 atttttcc 11825755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 41281968 - 41282083
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  41281968 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 41282067  T
Q  109 atttttccggaaaaaa 124  Q
    |||||||  |||||||    
T  41282068 atttttcaagaaaaaa 41282083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 12415454 - 12415558
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  ||||||||||  ||||||||||||| | ||||||||||||    
T  12415454 gagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaac 12415553  T
Q  109 atttt 113  Q
    |||||    
T  12415554 atttt 12415558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 12427514 - 12427618
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  ||||||||||  ||||||||||||| | ||||||||||||    
T  12427514 gagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaac 12427613  T
Q  109 atttt 113  Q
    |||||    
T  12427614 atttt 12427618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 16804074 - 16803970
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||   |||||||||| ||||||||||||| | ||||||||||||    
T  16804074 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaac 16803975  T
Q  109 atttt 113  Q
    |||||    
T  16803974 atttt 16803970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 16843356 - 16843252
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||   |||||||||| ||||||||||||| | ||||||||||||    
T  16843356 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaac 16843257  T
Q  109 atttt 113  Q
    |||||    
T  16843256 atttt 16843252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 18491811 - 18491707
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    |||||||||||| || ||||||||||||||||| |||||||||||| | |||||||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  18491811 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 18491712  T
Q  109 atttt 113  Q
    |||||    
T  18491711 atttt 18491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 6518484 - 6518568
Alignment:
Q  30 ttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| | |||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttttc 6518568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 966828 - 966932
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| || | |||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  966828 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 966927  T
Q  109 atttt 113  Q
    |||||    
T  966928 atttt 966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 34895735 - 34895835
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||| ||| |||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||| |||| |||||||||| ||||||||||||    
T  34895735 gagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaac 34895834  T
Q  109 a 109  Q
    |    
T  34895835 a 34895835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 4299414 - 4299520
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||| |||||| || |||| |||||||||||| |||||||||||||  |||||||||  ||||||||||| ||||||||||||| | ||||||| ||||    
T  4299414 gagattaaagagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataac 4299513  T
Q  109 atttttc 115  Q
    |||||||    
T  4299514 atttttc 4299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 4451944 - 4452026
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgatta 91  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||   ||||||||||   ||||||||||    
T  4451944 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 12531657 - 12531740
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaa 93  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| | || |||||| ||| ||||||||| | |||||||||||||    
T  12531657 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaa 12531740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 34817777 - 34817874
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||| | ||||||||||||||| |||||||||||| | || ||||||  |||||||||   |||| ||| |||| | |||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacatttt 34817874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 43335777 - 43335861
Alignment:
Q  29 gttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||| |||||||||| |||||||| ||||   ||||||||   ||||| || |||||||||||||| |||||||||    
T  43335777 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacatttt 43335861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 1750502 - 1750416
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| |||||||| |||   ||||||||| | ||||| || |||| | |||||||||||||||||    
T  1750502 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 4764738 - 4764824
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |   |||| ||||  ||||||||||| ||||| || |||||| |||| ||||||||||||    
T  4764738 tggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacatttt 4764824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 19047245 - 19047159
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  19047245 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 19047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 30838720 - 30838634
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||||   ||||  | |||| | |||||||||||||||||    
T  30838720 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 30838634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 43490413 - 43490501
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||| ||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||||    
T  43490413 tggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttc 43490501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 12302265 - 12302351
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| |||||||| |||   ||||||||| | |||||  | |||| | |||||||||||||||||    
T  12302265 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 12302351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 16096835 - 16096749
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||||| || | |||||||| |||||||| ||||  ||||| ||| | ||||| || |||| | |||||||||||||||||    
T  16096835 tggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacatttt 16096749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 13780736 - 13780797
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaat 77  Q
    |||||||| | ||||||||||||||| ||| |||||| ||||||||| |||  |||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaat 13780797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 40237025 - 40236921
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||| | ||||||||||||    
T  40237025 gagatgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaac 40236926  T
Q  109 atttt 113  Q
    |||||    
T  40236925 atttt 40236921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 33384977 - 33384872
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaata-gtgtgtatgattaaatgatgttcatgtaa 107  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||  || ||||||| | |||||||||||||||||||||||||||    
T  33384977 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaa 33384878  T
Q  108 catttt 113  Q
    ||||||    
T  33384877 catttt 33384872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 27535225 - 27535329
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||  |||  ||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  27535225 gagatgaaagagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaac 27535324  T
Q  109 atttt 113  Q
    |||||    
T  27535325 atttt 27535329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 31408627 - 31408731
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||||   |||||||||| ||||||||||||| | ||||||||||||    
T  31408627 gagatgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaac 31408726  T
Q  109 atttt 113  Q
    |||||    
T  31408727 atttt 31408731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 31513393 - 31513289
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||  || |||||||| |||||||||||||   ||||||||||||    
T  31513393 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaac 31513294  T
Q  109 atttt 113  Q
    |||||    
T  31513293 atttt 31513289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 43343636 - 43343724
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| ||| |||||| |||||||| ||||  ||||||||||| |||||  | ||||||||||||||||||||||||||    
T  43343636 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 43343724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 44416946 - 44417034
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| ||| |||||| |||||||| ||||  ||||||||||| |||||  | ||||||||||||||||||||||||||    
T  44416946 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 44417034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 42972940 - 42972854
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||||||||| | ||||| || |||| |||||||| ||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacatttt 42972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 4638200 - 4638299
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||| ||| ||||||||||||||||| |||||||||| ||| ||||  |||  ||||||||| | |||||||| |||| | |||||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttc 4638299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 10573837 - 10573749
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| | |||||| ||||  |||||||||||  ||||||| |||| | |||| ||||||||||||||    
T  10573837 tggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttc 10573749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 44326266 - 44326178
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| ||||||||  |||| ||||||||| |  ||||||| |||| | |||| ||||||||||||||    
T  44326266 tggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 44326178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 5015483 - 5015397
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||||||||| | |||||  | ||||   |||||||||||||||||    
T  5015483 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 5015397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 35069809 - 35069723
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||| |||||||||   ||||| || ||||   |||||||||||||||||    
T  35069809 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacatttt 35069723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 26898414 - 26898499
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacattt 112  Q
    ||||||| ||||||| |||||||||| |||||||| ||||   |||||||| | |||||||| |||| | ||||||||||||||||    
T  26898414 tggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 9216389 - 9216304
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| || ||||||||||  |||||||||||  | || || |||| | |||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatg-ggtgtacaataggatataggaataaagggtgttcatgtaacatttt 9216304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 24001024 - 24001110
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  24001024 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 24001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 42538443 - 42538529
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  42538443 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 42538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 43317528 - 43317445
Alignment:
Q  30 ttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||||| ||| |||||| ||||||| ||||    ||||||||   |||||||| |||||| |||||||||||||||||    
T  43317528 ttgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 43317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 24280597 - 24280694
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||| | || |||||||||||| |||||||||| |  ||| ||||||   |||| ||||| |||||||| |||| | |||||| ||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacatttt 24280694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 39998475 - 39998410
Alignment:
Q  48 aaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||| |||||||| ||||  |||||||||||  ||||||||||||   |||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacatttt 39998410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 32473388 - 32473492
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||  ||||||||||||| | ||||||||||||    
T  32473388 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaac 32473487  T
Q  109 atttt 113  Q
    |||||    
T  32473488 atttt 32473492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 17208180 - 17208076
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||  ||||||||||  ||||||||||||| | |||||| |||||    
T  17208180 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaac 17208081  T
Q  109 atttt 113  Q
    |||||    
T  17208080 atttt 17208076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 30622713 - 30622816
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||||||||||||| || |||||||||| ||| |||||||||  |  |||||||| ||||||||||||| ||||||||||||||    
T  30622713 gagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatg-ggcttacaatagggtgtatgattaaaggatgttcatgtaac 30622811  T
Q  109 atttt 113  Q
    |||||    
T  30622812 atttt 30622816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 42431718 - 42431626
Alignment:
Q  386 aacaaaaactccattctctgcatttgaaatttcaatggcggaggaagagaacaaccacacagtcacatatatagtgaaaatcaaagtcacactca 480  Q
    |||||||||||  ||| || |||| |||||||||||||||||||||||||||||| |||  | ||||||||| ||||||||||||||||||||||    
T  42431718 aacaaaaactc--ttccctacattagaaatttcaatggcggaggaagagaacaacgacattgccacatatattgtgaaaatcaaagtcacactca 42431626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 42433365 - 42433442
Alignment:
Q  403 ctgcatttgaaatttcaatggcggaggaagagaacaaccacacagtcacatatatagtgaaaatcaaagtcacactca 480  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||||| | ||| ||||||||||||| ||||    
T  42433365 ctgcatttgaaatttcaatggcggaggaagagaacaacgacattgtcacatatgttgtgcaaatcaaagtcaccctca 42433442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 5257083 - 5256995
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||||||||||||||||||||||||| |||||||| ||||  ||||||||| |  ||||||| |||||| |||| ||||||||||||||    
T  5257083 tggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 5256995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 7617221 - 7617135
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||| ||| | |||||||| |||| | |||||||||||||||||    
T  7617221 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacatttt 7617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 22512393 - 22512307
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| | ||||| || |||| | |||||||||||||||||    
T  22512393 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 22512307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 33801557 - 33801471
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| |||||||| ||||  ||||||||| | |||||  | |||| |||||||||||||||||||    
T  33801557 tggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacatttt 33801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 2614661 - 2614747
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  2614661 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 2614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 18034070 - 18033984
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| |||||||| |||   ||||||||| | ||||| || |||| | |||||||||||||||||    
T  18034070 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 18033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 41334675 - 41334761
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||| |||   |||||||| |||| | |||||||||||||||||    
T  41334675 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacatttt 41334761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 33855071 - 33855141
Alignment:
Q  43 ttaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||||| |||||| ||||  ||||||||| | ||||| || |||| | |||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 33855141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 55272370 - 55272474
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  55272370 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaac 55272469  T
Q  109 atttt 113  Q
    |||||    
T  55272470 atttt 55272474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 17619146 - 17619250
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||  ||||||||||| ||||||||||||| | ||||||||||||    
T  17619146 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaac 17619245  T
Q  109 atttt 113  Q
    |||||    
T  17619246 atttt 17619250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 32728463 - 32728359
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| |||||||||||| |||| ||||||||| |||||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  32728463 gagatgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaac 32728364  T
Q  109 atttt 113  Q
    |||||    
T  32728363 atttt 32728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 712066 - 711962
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| |||||||||||| |||||||||| ||| ||||||||   ||||||||||| ||||||||||||| | ||||||||||||    
T  712066 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaac 711967  T
Q  109 atttt 113  Q
    |||||    
T  711966 atttt 711962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 48435573 - 48435673
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||| ||| |||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||| |||| |||||||||| ||||||||||||    
T  48435573 gagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaac 48435672  T
Q  109 a 109  Q
    |    
T  48435673 a 48435673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 38851619 - 38851513
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||  ||||||| ||   |||||||||||| ||| ||||||||||    
T  38851619 gagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaac 38851520  T
Q  109 atttttc 115  Q
    |||||||    
T  38851519 atttttc 38851513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 35037111 - 35037005
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    |||| |||||| ||| ||||||||||||||||| |||||||||| ||| |||||||||  ||||||||||| ||||||| ||||| | || |||||||||    
T  35037111 gagaagaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaac 35037012  T
Q  109 atttttc 115  Q
    |||||||    
T  35037011 atttttc 35037005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 960864 - 960968
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| || | || | ||||||| |||||||||||||||||||| ||   ||||||||||| ||||||||||||| | ||||||||||||    
T  960864 gagatgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaac 960963  T
Q  109 atttt 113  Q
    |||||    
T  960964 atttt 960968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 46827700 - 46827804
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| ||||||||| || ||||||||| || | ||||||||   ||||||||||| ||||||||||||| | ||||||||||||    
T  46827700 gagatgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaac 46827799  T
Q  109 atttt 113  Q
    |||||    
T  46827800 atttt 46827804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 3756242 - 3756346
Alignment:
Q  10 agatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaaca 109  Q
    |||||||||| ||| |||| ||||||||| || |||| ||||| ||| |||||||||  ||||||||||| ||||||||||||| | |||||||||||||    
T  3756242 agatgaaaga-aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaaca 3756340  T
Q  110 tttttc 115  Q
    ||||||    
T  3756341 tttttc 3756346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 27893854 - 27893942
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||||||||||||||||||||||||| |||||||| ||||  ||||||||| |  ||||||| |||||| |||| ||||||||||||||    
T  27893854 tggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 27893942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 49229684 - 49229762
Alignment:
Q  35 agatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||| |||||| ||| ||| |||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacatttt 49229762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 43514698 - 43514786
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| ||||||||||  ||||||| ||||| ||||||||| | ||||| || |||| | |||||||||||||||||||    
T  43514698 tggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttttc 43514786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 27864652 - 27864566
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| |  ||||||| |||||| |||| ||||||||||||    
T  27864652 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27864566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 28988572 - 28988475
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||| | ||||| ||||||||| ||| ||||||||||||| ||||||  |||||||||   |||||||| |||| | |||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacatttt 28988475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19880060 - 19879990
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatag 79  Q
    ||||||||||||||| |||| |||||||||||| |||||||||||||| ||||  |||  |||||||||||    
T  19880060 gagatgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatag 19879990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 27550397 - 27550311
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||| ||||||| |||||||||| |||||||| ||||| ||||||||| | |||||  | |||| | |||||||||||||||||    
T  27550397 tggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 27550311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 36004110 - 36004162
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaat 61  Q
    ||||||||||||||| |||||||||||||| || ||| |||||||||||||||    
T  36004110 gagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaat 36004162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 48463460 - 48463548
Alignment:
Q  25 tatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||||| |||||||||| |||||||| ||||   ||||||||    ||||||| |||||| |||| ||||||||||||    
T  48463460 tatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacatttt 48463548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 41327544 - 41327643
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||||||| | ||| ||||||||||| |||||||||||||| || ||||| | ||||||||| | |||| ||| |||| | |||  ||||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttttc 41327643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 1771278 - 1771364
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| ||| |||||| || ||||| ||||  ||||||||| | ||||| || |||| | |||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 23036068 - 23035982
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||||| ||||||||  ||   ||||||||||| ||||| || |||| || ||||||||||||||||    
T  23036068 tggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacatttt 23035982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 33703229 - 33703143
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||||   ||||  | |||| | |||||||||||||||||    
T  33703229 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 33703143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 39631189 - 39631139
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaat 77  Q
    ||||||||||||||| |||||||||| |||||||| ||||| |||||||||    
T  39631189 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaat 39631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 55966358 - 55966444
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||   |||||||| |  ||||||| |||| | |||| ||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 55966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 28982835 - 28982920
Alignment:
Q  28 ggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||||||| |||||||||| ||||||||  |||   |||||||||| |||||  | |||| | |||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacatttt 28982920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 41848070 - 41847973
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||| | |||||||| |||||| || |||||||||| ||||||||||  |||||||||   |||| |||  ||| ||||||| |||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacatttt 41847973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 31680990 - 31680902
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| ||||||||  | |  ||||||||| |  ||||||| |||||| |||| | ||||||||||||    
T  31680990 tggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttttc 31680902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 41878494 - 41878408
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| ||| |||||| ||||||||| ||   |||||||||   |||||||| ||||   |||||||||||||||||    
T  41878494 tggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacatttt 41878408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 43949813 - 43949863
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaat 77  Q
    ||||||||||||||| |||||||||| |||||||| ||||  |||||||||    
T  43949813 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaat 43949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 45490325 - 45490411
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||| ||| | |||||||| ||||| ||||||||| |  ||||| | ||||   |||||||||||||||||    
T  45490325 tggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacatttt 45490411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 35450 - 35554
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||||||  ||||||||||||||| |||| |||||||    
T  35450 gagatgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaac 35549  T
Q  109 atttt 113  Q
    |||||    
T  35550 atttt 35554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 33242509 - 33242405
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| |||| |||||||||||| |||||||||||||| |||| ||||  ||||||||||  ||||||||||||||| ||||||||||||    
T  33242509 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaac 33242410  T
Q  109 atttt 113  Q
    |||||    
T  33242409 atttt 33242405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 406 - 524
Target Start/End: Original strand, 18078747 - 18078865
Alignment:
Q  406 catttgaaatttcaatggcggaggaagagaacaaccacacagtcacatatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccat 505  Q
    ||||||||||||||||||||||||| ||||||| |  || ||||||||||| ||| ||||||||||||| ||||||  |||| ||   ||| ||||||||    
T  18078747 catttgaaatttcaatggcggaggacgagaacagcgtcatagtcacatatacagtaaaaatcaaagtcagactcacagtcccggacctagacgaacccat 18078846  T
Q  506 tcctgatcatgatcatcga 524  Q
    |||||||||||||||||||    
T  18078847 tcctgatcatgatcatcga 18078865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 27441648 - 27441542
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||| |||    |||||||||| ||||||||||||| | ||||||||||||    
T  27441648 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaac 27441549  T
Q  109 atttttc 115  Q
    |||||||    
T  27441548 atttttc 27441542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 33254013 - 33253915
Alignment:
Q  15 aaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||| ||| |||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||| |||| |||||||||| |||||||||||||||||    
T  33254013 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacatttt 33253915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 18076829 - 18076907
Alignment:
Q  403 ctgcatttgaaatttcaatggcggaggaagagaacaaccacacagtcacatatatagtgaaaatcaaagtcacactcac 481  Q
    |||||||| ||||||| |||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  18076829 ctgcatttcaaatttctatggcgggagaagagaaccaccacatagtcacatatatagtgaaaatcaaagtcacactcac 18076907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 24203999 - 24204087
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||||| ||||| || |||||| |||||||||||||||||||    
T  24203999 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttc 24204087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 7367637 - 7367551
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||   ||||||||   |||||||| |||||||||||||| |||||||||    
T  7367637 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacatttt 7367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 13743233 - 13743319
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| |  ||||||| |||| | |||||||||||||||||    
T  13743233 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 13748733 - 13748819
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||  ||||||||| |  ||||||| |||| | |||||||||||||||||    
T  13748733 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 26670021 - 26670107
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||| |||||||||   ||||| || |||| | |||||||||||||||||    
T  26670021 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 26670107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 30736067 - 30735982
Alignment:
Q  30 ttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttttc 115  Q
    |||||||||||| |||||||||| || ||||| ||||| ||||||||| | ||||| || ||||   |||||||||||||||||||    
T  30736067 ttgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttc 30735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 31109216 - 31109320
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| | |||| || || |||| ||| |||||| |||||| ||||||  ||||| ||| |  |||||||||||| | ||||||||||||    
T  31109216 gagatgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaac 31109315  T
Q  109 atttt 113  Q
    |||||    
T  31109316 atttt 31109320  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 7273350 - 7273433
Alignment:
Q  30 ttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||||||||||| |||||||||| || ||||| ||||  ||||||||||  ||||| || |||| | |||||||||||||||||    
T  7273350 ttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacatttt 7273433  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 7292835 - 7292749
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||| |||   |||||||| |||||| ||||| |||||||||||    
T  7292835 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacatttt 7292749  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 9698345 - 9698431
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  9698345 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 9698431  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 26466887 - 26466801
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| ||||||||||  ||||||| ||||  ||||||||| | ||||| || |||| | |||| ||||||||||||    
T  26466887 tggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacatttt 26466801  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 3213499 - 3213402
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||| ||| ||||||||||| ||||| |||||||||| ||| |||| ||||  |||||||||    ||||||| |||| | |||| ||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 3213402  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 30014442 - 30014345
Alignment:
Q  16 aagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    |||| ||| ||||||||||||||||| |||||||||| | |||||| ||||   |||| ||| |  |||| || |||| | |||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacatttt 30014345  T

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Target: scaffold0003 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 45713 - 45819
Alignment:
Q  9 gagatgaaagagaaactatggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaac 108  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||| |||| |||    |||||||||| ||||||||||||| | ||||||||||||    
T  45713 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaac 45812  T
Q  109 atttttc 115  Q
    |||||||    
T  45813 atttttc 45819  T

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Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 773 - 687
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| ||||| |||||||||   ||||| || |||| | |||||||||||||||||    
T  773 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 687  T

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Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 11339 - 11253
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| ||||||||  |||  ||||||||| | |||||||| ||||   ||||||||| |||||||    
T  11339 tggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacatttt 11253  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 112743 - 112657
Alignment:
Q  27 tggttgtgagatgaaattaccaaaatgtccctaatgcatgatgtgtacaatagtgtgtatgattaaatgatgttcatgtaacatttt 113  Q
    ||||||||||||||| |||||||||| |||||||| |||   ||||||||| |  |||| || |||| | |||||||||||||||||    
T  112743 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 112657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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