View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_high_12 (Length: 275)
Name: NF4498_high_12
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 37 - 261
Target Start/End: Complemental strand, 13021522 - 13021291
Alignment:
| Q |
37 |
gactaaaattttggtttacatgttaaga-------tacatattaaggactaatctccatcaaaaaattgtgaggcacacaatgtaagttatcctcactca |
129 |
Q |
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| T |
13021522 |
gactaaaattttggtttacatgttaagaattaagatacatattaaggactaatctccatcagaaaattgtgaggcacacaatgtaagttatcctcactca |
13021423 |
T |
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| Q |
130 |
atcaaattttcttttgaagagtcaatcgaacatttcaccacttaagtaacgtgtcaaagtttcatatcagttggacaaaatccatcgttagcaaatgaca |
229 |
Q |
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| T |
13021422 |
atcaaattttctcttgaagagtcaatcgaacatttcaccacttaagtaacgtgtcaaagtttcatatcagttggactaaatccatcgttagcaaatgaca |
13021323 |
T |
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| Q |
230 |
tatgttacacttttgtatgcatatacaaaatt |
261 |
Q |
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| T |
13021322 |
tatgttacacttttgtatgcatatacaaaatt |
13021291 |
T |
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