View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_high_18 (Length: 239)
Name: NF4498_high_18
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_high_18 |
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| [»] scaffold1840 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 9657090 - 9657294
Alignment:
| Q |
1 |
aaaaataaccatccattaaagcatgataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctcttcca |
100 |
Q |
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| T |
9657090 |
aaaaataatcatccattaaagcatcataagtaacaacattcggttgtacaccttttctcatcgtcatag---------------cttgtttcctcttcca |
9657174 |
T |
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| Q |
101 |
tccttgcacaatgcatcaactagtataataaaaggataaacatttgg-nnnnnnnntatcccctttgcgatcatttcaggatatacctcctatgcatcat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657175 |
tccttgcacaatgcatcaactagtataataaaaggataaacatttggaaaaaaaaatatcccctttgcgatcatttcaggatatacctcctatgcatcat |
9657274 |
T |
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| Q |
200 |
ttacaactttatctctacac |
219 |
Q |
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|||||||||||||||||||| |
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| T |
9657275 |
ttacaactttatctctacac |
9657294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9648088 - 9648310
Alignment:
| Q |
1 |
aaaaataaccatccattaaagcatgataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctcttcca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||| |||| | |||| |||||||||||| |
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| T |
9648088 |
aaaaataaccatccattaaagcatcataagtaacaacattcggttgtacaccttttttcatcatcgtagccaacacactcacagct--tttcctcttcca |
9648185 |
T |
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| Q |
101 |
tccttgcacaatgcatcaactagtataataaaaggataaacatttgg-nnnnnnnntatcccctttgcgatcatttcaggatatacctcctatgcatcat |
199 |
Q |
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| T |
9648186 |
tccttgcacaatgcatcaactagtatactaaaagaataaacatttggaagaaaaaaaatcgcctttgcaatcatttcaggatatacctcatatgcatcat |
9648285 |
T |
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| Q |
200 |
ttacaactttatctctacacaaact |
224 |
Q |
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|||||| |||||||||||||||||| |
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| T |
9648286 |
ttacaagtttatctctacacaaact |
9648310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 9628571 - 9628702
Alignment:
| Q |
3 |
aaataaccatccattaaagcatgataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctc-ttccat |
101 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | | |
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| T |
9628571 |
aaataaccatccattaaagcaccataagtaacaacattcggatgtacaccttttttcatcatcatagccaacacacttatagcttgtttcctcttttcgt |
9628670 |
T |
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| Q |
102 |
ccttgcacaatgcatcaactagtataataaaa |
133 |
Q |
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| T |
9628671 |
catagcacaatgcatcaactagtatactaaaa |
9628702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 33997688 - 33997544
Alignment:
| Q |
4 |
aataaccatccattaaagcatgataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctc-ttccatc |
102 |
Q |
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|||| |||||||||| |||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| | | ||||||||||||| | ||| ||| |
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| T |
33997688 |
aatatccatccattatagcaccataagtaacaacattcggttttacaccttttttcatcatcatagccaacaaattcatagcttgtttcccctttcgatc |
33997589 |
T |
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| Q |
103 |
cttgcacaatgcatcaactagtataataaaaggataaacatttgg |
147 |
Q |
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|||||| | ||| ||||||||||| |||||| |||||||||||| |
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| T |
33997588 |
cttgcatagtgcgtcaactagtatgctaaaagtataaacatttgg |
33997544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1840 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1840
Description:
Target: scaffold1840; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 891 - 837
Alignment:
| Q |
169 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaac |
223 |
Q |
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|||||||||| ||||| ||| |||||||||||||||| ||||||| | ||||||| |
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| T |
891 |
atcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaac |
837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 2713 - 2659
Alignment:
| Q |
169 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaac |
223 |
Q |
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|||||||||| ||||| ||| |||||||||||||||| ||||||| | ||||||| |
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| T |
2713 |
atcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaac |
2659 |
T |
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