View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4498_high_19 (Length: 239)
Name: NF4498_high_19
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 1224701 - 1224563
Alignment:
| Q |
17 |
aaaatgcactcataccacccaatacactagtcacaaagcaaggactagttaatcttttagaagcctcgtttatagcatattgaagaatgttaacaagtac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1224701 |
aaaatgcactcataccacccaatacactagtcacacatcaaggactagttaatcttttagaagccttgtttatagcatattgaagaatgttaacaagtac |
1224602 |
T |
|
| Q |
117 |
tctaaaacagaagctatgaaatcaaagatagaaatgtca |
155 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1224601 |
tctaaaacagaagttatgaaatcaaagatagaaatgtca |
1224563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University