View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_high_20 (Length: 229)
Name: NF4498_high_20
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 26665355 - 26665159
Alignment:
| Q |
15 |
attctccttaattaagatttgtgacacnnnnnnnatcactgctgcgttttaaaacattgaagtatgtacctcataaaaacttataccaagtcatgttatg |
114 |
Q |
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| T |
26665355 |
attctccttaattaagatttgtgacacttttgttatcgctgctgcgttttaaaacattgaagtatgcacctcataaaaacttataccaagtcatgttatg |
26665256 |
T |
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| Q |
115 |
tcctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca--tttcggtgcccgacacgacgtctatgattacagtgaatcacgtcat |
211 |
Q |
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| T |
26665255 |
tcctat--tgtacgaacactccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctataattacagtgaatcacgtcat |
26665159 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 27932358 - 27932306
Alignment:
| Q |
113 |
tgtcctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca |
165 |
Q |
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| T |
27932358 |
tgtcctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgaca |
27932306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 17876286 - 17876237
Alignment:
| Q |
116 |
cctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca |
165 |
Q |
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| T |
17876286 |
cctatgaagcacagacactccttggattaggtgtgtcctggtgtcggaca |
17876237 |
T |
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