View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_high_21 (Length: 227)
Name: NF4498_high_21
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9657055 - 9656840
Alignment:
| Q |
1 |
atttaccgttgtggtccagaagggagtggtgccaaatgttcgatgctacaatatcattattaattaatggactgtgcaagaaaaaagggtggatgaagcc |
100 |
Q |
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| T |
9657055 |
atttaccgttgtggtccagaagggagtggtgccaaatgttcgatgctacaatatcattattaattaatggactgtgcaagaaaaaagggtggatgaagcc |
9656956 |
T |
|
| Q |
101 |
atgaatctcttcagagagatgcattggaaaaagattattcctttccaaagagcaagtggcaagatatgtcataggcaaggttttagacttctactaaaca |
200 |
Q |
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| T |
9656955 |
atgaatctcttcagagagatgcattggaaaaagattattcctttccaaagagcaagtggcaagatatgtcataggcaaggttttagacttctactaaaca |
9656856 |
T |
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| Q |
201 |
acctgacccatcttca |
216 |
Q |
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| T |
9656855 |
acctgacccatcttca |
9656840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 9628533 - 9628328
Alignment:
| Q |
5 |
accgttgtggtccagaagggagtggtgccaaatgttcgatgctacaatatcattattaattaatggactgtgc-aagaaaaaagggtggatgaagccatg |
103 |
Q |
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| T |
9628533 |
accgttatgatctagaagggagtggtgccaaatgttcgatgctacaatatcattattaattaatggattgtgcgaaaaaaaaagggtggatgaagcaatg |
9628434 |
T |
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| Q |
104 |
aatctcttcagagagatgcattggaaaaagattattcctttccaaagagcaagtggcaagatatgtcataggcaaggttttagacttctactaaacaacc |
203 |
Q |
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| T |
9628433 |
aatctcttcggagagatgcatggggaaaagattattcctttc-------caagtggctagatttgtcatacgctaagttttagacttctaccaaacaacc |
9628341 |
T |
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| Q |
204 |
tgacccatcttca |
216 |
Q |
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| T |
9628340 |
tgacctatcttca |
9628328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 33997734 - 33997861
Alignment:
| Q |
12 |
tggtccagaagggagtggtgccaaatgttcgatgctacaatatcattattaattaatggactgtgcaagaaaa-aagggtggatgaagccatgaatctct |
110 |
Q |
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| T |
33997734 |
tggtccaggagggagtggagccgaatgtttggtgctacaatatcattattaat----ggattgtgcaagaaaaaaagggtggatgaagccatgaatctct |
33997829 |
T |
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| Q |
111 |
tcagagagatgcattggaaaaagattattcct |
142 |
Q |
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| T |
33997830 |
ttaaagagatgcattggaaaaagattaatcct |
33997861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 9648025 - 9647990
Alignment:
| Q |
181 |
ttttagacttctactaaacaacctgacccatcttca |
216 |
Q |
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| T |
9648025 |
ttttcgacttctactaaacaacctgacccatcttca |
9647990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 29348735 - 29348676
Alignment:
| Q |
83 |
aaaagggtggatgaagccatgaatctcttcagagagatgcattggaaaaagattattcct |
142 |
Q |
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| T |
29348735 |
aaaaaggttgatgaagccatgaatctctttaaagaaatgcattgcaaaaacattattcct |
29348676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 29889601 - 29889651
Alignment:
| Q |
92 |
gatgaagccatgaatctcttcagagagatgcattggaaaaagattattcct |
142 |
Q |
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| T |
29889601 |
gatgaagccatgaatctctttaaagaaatgcattgcaaaaacattattcct |
29889651 |
T |
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