View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_low_2 (Length: 530)
Name: NF4498_low_2
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Complemental strand, 39491539 - 39491031
Alignment:
| Q |
14 |
atcactttttgtatgttaatgttaactattttgccgacctctaaaaatggaccggttctgtgttaaagaaagccatggccccaaatcattaccaaactag |
113 |
Q |
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| T |
39491539 |
atcactttttgtatgttaatgttaactattttgccgacctctaaaaatggaccggttctgtgttaaagaaagccatggccccaaatcattaccaaactag |
39491440 |
T |
|
| Q |
114 |
tggtttttataaatattagacaaataaagggatttctaaatatacttgtctttctttattaaaaagatgaagtggttgaaataaacaatgacaaatataa |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491439 |
tggtttttataaatattggacaaataaagggatttctaaatatacttgtctttctttattaaaaagatgaagtggttgaaataaacaatgacaaatataa |
39491340 |
T |
|
| Q |
214 |
aacgactctaggaatcaaccaataggtgtcacgaaaggagaggttgtaagtagattctaattttgacgtggctcttatttcttctaattaacgatcgatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491339 |
aacgactctaggaatcaaccaataggtgtcacgaaaggagaggttgtaagtagattctaattttgacgtggctcttatttcttctaattaacgatcgatg |
39491240 |
T |
|
| Q |
314 |
caacgaattttatgttttcttgcgcaattctttctcatttccttggcctatatatgtaaccccaccaccttgtttctaagacactgcaacctattacaac |
413 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39491239 |
caacgaattttatgttttcttgtgc-attctttctcatttccttggcctatatatgtaaacccaccaccttgtttctaagacactgcaacctattacaac |
39491141 |
T |
|
| Q |
414 |
aaaatagcttctgtctgctggaagctaaaaacaccatcctctcacaaatttttactattttgaatcatcaatggctcgcaacttcaacaacgttaaagct |
513 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491140 |
aaaatagcttctgtctgctggaagctcaaaacaccatcctctcacaaatttttactattttgaatcatcaatggctcgcaacttcaacaacgttaaagct |
39491041 |
T |
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| Q |
514 |
atctctgctc |
523 |
Q |
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| T |
39491040 |
atctctgctc |
39491031 |
T |
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