View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_low_22 (Length: 209)
Name: NF4498_low_22
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 29982979 - 29983132
Alignment:
| Q |
19 |
cctcaatcttctcagtcaaaatactagcaaaaggaccttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatc |
118 |
Q |
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| T |
29982979 |
cctcaatcttctcagtcaaaatactagcaaaaggaccttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatc |
29983078 |
T |
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| Q |
119 |
agttaaaaaactacaacccaaaaccagtgtcaatgtgatgcaaatgtaaatctc |
172 |
Q |
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| T |
29983079 |
agttaaaaaactacaacccaaaactagtgtcaatgtgatgcaaatgtaaatctc |
29983132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 51403846 - 51403699
Alignment:
| Q |
21 |
tcaatcttctcagtcaaaatactagcaaaaggaccttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatcag |
120 |
Q |
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| T |
51403846 |
tcaatcttctcaattaaaacaccagcaaaaggaccatctttaggcataattataccaataacaaaagcaccaaataatgcatgaattccaatagtatcag |
51403747 |
T |
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| Q |
121 |
ttaaaaaactacaacccaaaaccagtgtcaatgtgatgcaaatgtaaa |
168 |
Q |
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| T |
51403746 |
taacaaaactacaagccaaaaccaatgtcaatgtgatacaaatgtaaa |
51403699 |
T |
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