View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_low_4 (Length: 424)
Name: NF4498_low_4
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 19094978 - 19094579
Alignment:
| Q |
14 |
atcactatgaatgtttcgatgaggcgaaatgggataaggaaagaagaattatagatgagtcagccacaggaagaagcgtgatgcatgctacaagccacat |
113 |
Q |
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| T |
19094978 |
atcactatgaacgtttcgatgaggcaaaatgggataaggaaagaagaattatagatgagtcagccactagaagaagagtgatgcatgctacaagccacat |
19094879 |
T |
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| Q |
114 |
gttgtgcaatcagaaggggattcaagatggacaaccaatacttaaaatgcaaagcgtgttatgagccacgcatcatgccatcatgaagagagatgaagtg |
213 |
Q |
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| T |
19094878 |
gttgtgcaatcagaaggggattcaagatggacaaccaatacttaaaatgcaaagcgtgttatgagccacgcatcatgccatcatgaagagagatgaagtg |
19094779 |
T |
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| Q |
214 |
gttcgctattgccatcatgtcaaggaattcaagcatgatgacagagatgccttcttcaattccattcaatacattatacttatgtaaatttggtaccttt |
313 |
Q |
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| T |
19094778 |
gttcgctattgccatcatgtcaaggaattcaagcatgatgacagagatgccttcttcaatttcattcaatacattatacttatgtaaatttggtaccttt |
19094679 |
T |
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| Q |
314 |
tttatccgttaagaacgtcagtagtgaagctaggtcatcaaagagttatacagtagtctcattctgggttccaatgttccggtctacgacacaagcctat |
413 |
Q |
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| T |
19094678 |
tttatccgttaagaacgt-agtagtgaagctaggtcatcaaagagttatacagtagtcccattctgggttccaatgttccggtctacgacacaagtctat |
19094580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 9830062 - 9830135
Alignment:
| Q |
27 |
tttcgatgaggcgaaatgggataaggaaagaagaattatagatgagtcagccacaggaagaagcgtgatgcatg |
100 |
Q |
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| T |
9830062 |
tttcggtgaggcgaaatgcgataaggaatgaagcatcacaaatgagtcaaccattggaagaagcgtgatgcatg |
9830135 |
T |
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