View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_low_5 (Length: 380)
Name: NF4498_low_5
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 30408372 - 30408738
Alignment:
| Q |
1 |
agtatgactaccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtatgtcgatctcactctcaatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30408372 |
agtatgactaccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtatgtcgatgtcactctcaatttg |
30408471 |
T |
|
| Q |
101 |
gactaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccgggtagctctccttcttcctgcaacagaaaattaaaccaacaacatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408472 |
gactaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccgggtagctctccttcttcctgcaacagaaaattaaaccaacaacatac |
30408571 |
T |
|
| Q |
201 |
atagactg--tctctatttgtattgccaatgccagcatgaagacagtagcagataaagtacagtaccttcttttcgattctgagtcggcatcttcaggat |
298 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30408572 |
atagactgtctctctatttgtattgccaatgccagcatgaagacagtagcagataaagtacagtaccttcttttcgattctgaatcggcatcttcaggat |
30408671 |
T |
|
| Q |
299 |
tgttttcaggtgataggactgcttgagtggctccatctttatcaccatcatgattaccaagtgctga |
365 |
Q |
| |
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| T |
30408672 |
tgttttcaggtgataggactgcttgagtggctccatctttatcaccatcatgattaccaagtgctga |
30408738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 30394758 - 30395047
Alignment:
| Q |
3 |
tatgactaccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtatgtcgatctcactctcaatttgga |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||| |
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| T |
30394758 |
tatgactaccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtacatcaatgtcactctcactttgga |
30394857 |
T |
|
| Q |
103 |
ctaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccgggtagctctccttcttcctgcaacagaaaattaaaccaacaacatacat |
202 |
Q |
| |
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||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
30394858 |
ctatcactcgtggcgcacgaacagccctccgaggcagcattgtttcaaccgggtagctctccttcttcctgcaacagaaaattaaaccaacaacgtatat |
30394957 |
T |
|
| Q |
203 |
agactgtc--tctatttgtattgccaatgccagcatgaagacagtagcagataaagtacagtaccttcttttcgattctgagtcggcatc |
290 |
Q |
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||| |||| |||||||||||||||||||| | ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
30394958 |
agattgtctttctatttgtattgccaatgctaacatgaagacagtatcagataaaatacaataccttcttttcgattctgagtcggcatc |
30395047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 323 - 362
Target Start/End: Original strand, 30395062 - 30395101
Alignment:
| Q |
323 |
gagtggctccatctttatcaccatcatgattaccaagtgc |
362 |
Q |
| |
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| T |
30395062 |
gagtggctccatctttatcaccatcatgattatcaagtgc |
30395101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 2057111 - 2057042
Alignment:
| Q |
4 |
atgactaccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatc |
73 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||||||||| |
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| T |
2057111 |
atgactaccttgggttgggatttcctttgacaactttctgtccatatttccgccaccgataaccatcatc |
2057042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 22295089 - 22295006
Alignment:
| Q |
9 |
taccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtatgtcgatctcactc |
92 |
Q |
| |
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| T |
22295089 |
tacctagggttaggattgcctcttaccaccttctgcccatatttacgccagcgataaccatcatccaatatgtcaacctcactc |
22295006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 18875594 - 18875640
Alignment:
| Q |
27 |
cctttgacaaccttctgtccatactttcgccagcgataaccatcatc |
73 |
Q |
| |
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||||||||||| ||||||||||| |||||||| | |||||||||||| |
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| T |
18875594 |
cctttgacaactttctgtccatattttcgccatctataaccatcatc |
18875640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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