View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_low_6 (Length: 369)
Name: NF4498_low_6
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 36808881 - 36809219
Alignment:
| Q |
14 |
gtatgatattgtcgttgcttcaaatatgctggtctgattactgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttggtc |
113 |
Q |
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| T |
36808881 |
gtatgatattgtggttgcttcaaatatgctggtctgattaccgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttggtc |
36808980 |
T |
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| Q |
114 |
attggtgtacacttaaactttgggatgttcctagtatagcttgttttagctcttgaactgatgtatgttgtttgtcttagactcttagctctagctggtg |
213 |
Q |
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| T |
36808981 |
attggtgtac--ttaaactttgggatgttcctagta--gcttgttttagctcttgaactgatgtatgttgtttgtcttagactcttagctctagctggtg |
36809076 |
T |
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| Q |
214 |
tgatgtgcatatatggagagttactttaccgaactctttatcattaagagttgtagtattcattatgattctaacacttattttaaagaaaatagaaaca |
313 |
Q |
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| T |
36809077 |
tgatgtgcatatatggagagttactttacccaactttttatcattaagagttgtagtattcattatgattctaacacttattttaaagaaaatagaaaca |
36809176 |
T |
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| Q |
314 |
tctgaattgatgagtgaatcaagtgtcatttgtggtggaaaat |
356 |
Q |
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| T |
36809177 |
tctgaattgatgagtgaatcaagtgtcatttgtggtggaaaat |
36809219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 36509831 - 36509735
Alignment:
| Q |
100 |
ttttttggttggtcattggtgtacacttaaactttgggatgttcctagtatagcttgttttagctcttgaactgatgtatgttgtttgtcttagactctt |
199 |
Q |
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| T |
36509831 |
ttttttggtttgccattggtgtacacttaaacttttggatgtt-ctag--tagcttgttttagctctt-aactaatgtatgttgtttgtcttagactctt |
36509736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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