View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4498_low_7 (Length: 343)
Name: NF4498_low_7
Description: NF4498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4498_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 50 - 341
Target Start/End: Complemental strand, 1224412 - 1224121
Alignment:
| Q |
50 |
caatggaaaattgtatgttcaggcattggttgcggttagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacgag |
149 |
Q |
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| T |
1224412 |
caatggaaaattgtatgttcaggcattggttgcggtgagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacaag |
1224313 |
T |
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| Q |
150 |
ccaaccaaaatcgtgttgttgtcaataggaaccggaagaaatggggaaactcaaggggttgatgctaatactgcacgattcatttcggctaataattgga |
249 |
Q |
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| T |
1224312 |
ccaaccaaaatcgtgttgttgtcaataggaaccggaagaaatggggaaactcaaggggttgatgctaatattgcacgattcatttcggctaataattgga |
1224213 |
T |
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| Q |
250 |
taaaagttatgtctgcaggtcttgctatgtctgctcaacacatgaatgaatatcacctcaaagcagtgtttccagatctcccatcttctgat |
341 |
Q |
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| T |
1224212 |
taaaagttatgtctgcaggtcttgctatgtctgctcaacacatgaatgaatatcacctcaaagcagtgtttcctgatctcccatcttctgat |
1224121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 1277219 - 1277107
Alignment:
| Q |
67 |
ttcaggcattggttgcggttagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacgagccaaccaaaatcgtgtt |
166 |
Q |
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| T |
1277219 |
ttcaggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaagaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgtt |
1277120 |
T |
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| Q |
167 |
gttgtcaatagga |
179 |
Q |
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| T |
1277119 |
gttgtcattagga |
1277107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1224497 - 1224441
Alignment:
| Q |
1 |
cttgttctaagacacttgttagcgagacgatttattttatttttcttatcaatggaa |
57 |
Q |
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| T |
1224497 |
cttgttttaaaacacttgttagcaagacgattcattttatttttcttatcaatggaa |
1224441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 1196365 - 1196275
Alignment:
| Q |
89 |
tgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacgagccaaccaaaatcgtgttgttgtcaatagga |
179 |
Q |
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| T |
1196365 |
tgaagtgatgcaagaattggaggagaaaaattatgatttcatacctgtgaatccaaacgaacctaccaaattcgtgttgttgtcattagga |
1196275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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