View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499-Insertion-1 (Length: 1134)
Name: NF4499-Insertion-1
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 508 - 1134
Target Start/End: Original strand, 53103921 - 53104548
Alignment:
| Q |
508 |
acctctcttaaggaaatggcggcatattgcaaagtcttcttcacaagaaagaaccaatagatcatctaagatattaacattcttgtctgcaaatatctgt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53103921 |
acctctcttaaggaaatggcggcatattgcaaagtcttcttcacaagaaagaaccaatagatcatctaagatattatcattcttgtctgcaaatatctgt |
53104020 |
T |
|
| Q |
608 |
ttttcatccactagctgaagagtgaaaacaatttatgaagaatatgcgatgaacatgacataagaaataatccaaaacacctaatattgaaaccacaggt |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53104021 |
ttttcatccactagctgaagagtgaaaacaatttatgaagaatatgtgatgaacatgacataagaaataattcaaaacacctaatattgaaaccacaggt |
53104120 |
T |
|
| Q |
708 |
caattgcagctgtggagtggcatgcatggatgaatattcaccttcaggggtggcttttgtcttgctcgagcaagagaaactggcatgtccaagcctattt |
807 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53104121 |
caattgcagcagtggagtggcatgcatggatgaatattcaccttcaggagtggcttttgtcttgctcgagcaagagaaactggcatggtaaagcctattt |
53104220 |
T |
|
| Q |
808 |
cctcttcctttttcatatccctcaaaatataatttttctcatcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagtt |
907 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53104221 |
ccttttcctttttcatatccctcaaaatataatttttctcatcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagtt |
53104320 |
T |
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| Q |
908 |
cccaagagccattgcttccagcatattctttgtacgtgtaaacttgtctgttatgaaatgagt-gcttccactgagtttgctgcagtagatatattaaga |
1006 |
Q |
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| T |
53104321 |
accaagagccattgcttccagcatattctttgtatgtgtaaacttgtctgttatgaaatgagtggcttccactgagtttgatgcagtagatatattaaga |
53104420 |
T |
|
| Q |
1007 |
cgcg-caagatctgc-aggaggaaagaacaacatcacctagtcgat-atcacaacatttagcattctctagaactcctatcataaaacataaaagc-ata |
1102 |
Q |
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|||| |||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||| ||| |
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| T |
53104421 |
cgcgccaagatctgcaaggaggatagaacaacatca-ctagtcgataatcacaacatttagcatctcctag-actcctatcat-aaacataaaagcaata |
53104517 |
T |
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| Q |
1103 |
atttaccttctgttgttgcttggaggacattg |
1134 |
Q |
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| T |
53104518 |
atttaccttctgttgttgctt-gaggacattg |
53104548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 241 - 511
Target Start/End: Original strand, 53100742 - 53101013
Alignment:
| Q |
241 |
tctcgcgggagttaagtcccgctggctctaagattaaacctgcaactattatataattgataccatgttatggacccattattttcctttctctaggatt |
340 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53100742 |
tctcacgggagttaagtcccgctggctctaagattaaacctgcaactattatataattgataccatgttatggacccattattttcctttctctaggatt |
53100841 |
T |
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| Q |
341 |
agcttttctaacctttcaccaaaatcgaaaaaacattggtgggacctggacccacaagttagtttgatttttatataccttcttccctgtaacaaacaca |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53100842 |
agcttttctaacctttcaccaaaatcgaaaaaacattggtgggacttggacccacaaattagtttgatttttatataccttcttccctgtaacaaacaca |
53100941 |
T |
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| Q |
441 |
ctaattgggtgttg-aaaaaatcattaatttaagctcaaagaaaaattggtgcctgacaaaatgcatgacct |
511 |
Q |
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| T |
53100942 |
ctaattgggtgttgaaaaaaatcattaatttaagctcaaagaaaaattggtgcctgacaaaatgcatgacct |
53101013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 53100578 - 53100721
Alignment:
| Q |
8 |
aatgcatttatattgcaaaaaggagataagcatgtggatgacatatgattcttatatcttccagtctcatcccgggctattacgatggtgaagaatgcac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
53100578 |
aatgcatttatattgcaaaaaggagataagcatgtggacggcatatcattcttatatcttccagtcccatctcgggccgttacgatggtgaagaatgcac |
53100677 |
T |
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| Q |
108 |
catatgtaaaattctgttcttttactcaaacgattttgttcattt |
152 |
Q |
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| T |
53100678 |
tatatgtagaattctgttc-tttactcaaacgattttgttgattt |
53100721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 747 - 1067
Target Start/End: Original strand, 43916875 - 43917198
Alignment:
| Q |
747 |
accttcaggggtggcttttgtcttgctcgagcaagagaaactggcatgtccaagcctatttcctcttcctttttcatatccctcaaaatataatttttct |
846 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43916875 |
accttcaggagtggcttttgtcttgctcgagcaagagaaactggcatgctaaagcctatttccttttcctttttcatatccctcaaaatataatttttct |
43916974 |
T |
|
| Q |
847 |
catcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagttcccaagagccattgcttccagcatattctttgtacgtgt |
946 |
Q |
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| T |
43916975 |
catcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagttaccaagagccattgcttccagcatattctttgtacgtgt |
43917074 |
T |
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| Q |
947 |
aaacttgtctgttatgaaatgagt-gcttccactgagtttgctgcagtagatatattaagacgcg-caagatctgc-aggaggaaagaacaacatcacct |
1043 |
Q |
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||||||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||||| ||||||| | |||||||||| || |
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| T |
43917075 |
aaacttgtctgctatgaaatgagtggcttccattgagcttgatgcagtagatatattaagacgcgccaagatctgcaaggaggataaaacaacatca-ct |
43917173 |
T |
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| Q |
1044 |
agtcgat-atcacaacatttagcat |
1067 |
Q |
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||| ||| ||||||||||||||||| |
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| T |
43917174 |
agttgataatcacaacatttagcat |
43917198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 508 - 743
Target Start/End: Original strand, 43916468 - 43916703
Alignment:
| Q |
508 |
acctctcttaaggaaatggcggcatattgcaaagtcttcttcacaagaaagaaccaatagatcatctaagatattaacattcttgtctgcaaatatctgt |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43916468 |
acctctcttaaggaaatggcggcatattgcaaagtcttcttcacaagaaagaatcaatagatcatctaagatattatcattcttgtctgcaaatatctga |
43916567 |
T |
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| Q |
608 |
ttttcatccactagctgaagagtgaaaacaatttatgaagaatatgcgatgaacatgacataagaaataatccaaaacacctaatattgaaaccacaggt |
707 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43916568 |
ttttcatccactagctgaagaatgaaaacaatttataaagaatatgtgatgaacacaacataagaaataatccaaaacacctaatattgaaaccacaggt |
43916667 |
T |
|
| Q |
708 |
caattgcagctgtggagtggcatgcatggatgaata |
743 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |
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| T |
43916668 |
caattgcagctgtggagtggcatgcatagatgaata |
43916703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 48000854 - 48000905
Alignment:
| Q |
313 |
gacccattattttcctttctctaggattagcttttctaacctttcaccaaaa |
364 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48000854 |
gacccattattttccattctctaggattagcttttctaacctttcaccaaaa |
48000905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 807 - 895
Target Start/End: Complemental strand, 6804996 - 6804908
Alignment:
| Q |
807 |
tcctcttcctttttcatatccctcaaaatataatttttctcatcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgt |
895 |
Q |
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|||| ||||||||| ||||||||| ||||||||||||||||| || ||| |||| ||||||||||| ||||||| ||| ||||||| |
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| T |
6804996 |
tccttttcctttttggcatccctcaatatataatttttctcatccataaaacagttagcttgtccacagctctcaatccacaagtgtgt |
6804908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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