View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499-Insertion-12 (Length: 260)
Name: NF4499-Insertion-12
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-12 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 47292297 - 47292551
Alignment:
| Q |
6 |
caaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292297 |
caaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggc |
47292396 |
T |
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| Q |
106 |
cacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47292397 |
cacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataaccaaatggatttccacaaagcttccctgcagtggtg |
47292496 |
T |
|
| Q |
206 |
acggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292497 |
acggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgt |
47292551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 47298906 - 47299158
Alignment:
| Q |
8 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47298906 |
aaattcacttctgagagcctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
47299005 |
T |
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| Q |
108 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |
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| T |
47299006 |
cagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggtttccacaaagcttccttgcagtggtgac |
47299105 |
T |
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| Q |
208 |
ggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgt |
260 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47299106 |
ggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaattgt |
47299158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 47267926 - 47267697
Alignment:
| Q |
31 |
acgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagta |
130 |
Q |
| |
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|||||| | |||||| | |||||||||||||| |||||||||||||||||| || ||||||||||||||||| || ||||||||||| |||||||| ||| |
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| T |
47267926 |
acgagttacatctgaaacaacacaagaccttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgta |
47267827 |
T |
|
| Q |
131 |
acttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagt |
230 |
Q |
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|||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
47267826 |
acttcagcttttaattttcttaccaactccacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaat |
47267727 |
T |
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| Q |
231 |
taccgtaatatccaacaagtggcgaattgt |
260 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
47267726 |
taccgtagtatccaacaagtggcgaattgt |
47267697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 47279323 - 47279072
Alignment:
| Q |
6 |
caaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggc |
105 |
Q |
| |
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||||||||||||||| | | ||||||||||||| ||||| | ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| || |
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| T |
47279323 |
caaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatcgttccttaataaccataagatctgc |
47279224 |
T |
|
| Q |
106 |
cacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtg |
205 |
Q |
| |
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|| ||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||| ||||| | || ||||||||||||||||||||||| |||||| |
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| T |
47279223 |
caaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacctaaaggatttccacaaagcttccctgcggtggtg |
47279124 |
T |
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| Q |
206 |
acggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaat |
257 |
Q |
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|| || || ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
47279123 |
acagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaat |
47279072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 47283914 - 47283665
Alignment:
| Q |
8 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
107 |
Q |
| |
|
||||||||||||| | | ||||||||||||| ||||| | |||||| || ||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
47283914 |
aaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataaccataagatctgcca |
47283815 |
T |
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| Q |
108 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
207 |
Q |
| |
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||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||||||||| | || || |||||||||||||||||||| |||||||| |
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| T |
47283814 |
aagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccctgcggtggtgac |
47283715 |
T |
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| Q |
208 |
ggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaat |
257 |
Q |
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|| || ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
47283714 |
agcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaat |
47283665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 47243045 - 47242805
Alignment:
| Q |
8 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| || | | ||||| ||| |||||||||||||||| ||||||||||||||||||| ||| || | |
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| T |
47243045 |
aaattcacttctgagaaattagcacgagtccaatccgacactatacaagttcttccagttgtaaataaacatcgttccttaataaccataaaatctgcta |
47242946 |
T |
|
| Q |
108 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||| | ||| | ||||||||||||| | ||| |||||||| |
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| T |
47242945 |
aagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgac |
47242846 |
T |
|
| Q |
208 |
ggccgctgggtaagcaaaacagttaccgtaatatccaacaa |
248 |
Q |
| |
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||||| | | |||||| || ||||||||||||||||||| |
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| T |
47242845 |
agccgccgagaaagcaatgcaattaccgtaatatccaacaa |
47242805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 47257172 - 47256935
Alignment:
| Q |
8 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
107 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||| | | ||| | ||| | ||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
47257172 |
aaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgcca |
47257073 |
T |
|
| Q |
108 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
207 |
Q |
| |
|
|| |||||||| | ||| ||||||| ||||||| |||||||| |||||||||||||||| | ||| | ||||||||||||| | ||| |||||||| |
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| T |
47257072 |
atgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgac |
47256973 |
T |
|
| Q |
208 |
ggccgctgggtaagcaaaacagttaccgtaatatccaa |
245 |
Q |
| |
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||||| | | |||||| |||||| || |||||||||| |
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| T |
47256972 |
tgccgccgagaaagcaatacagttgccataatatccaa |
47256935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 32731712 - 32731475
Alignment:
| Q |
8 |
aaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggcca |
107 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||| | | ||||| ||| | |||||||||||||| |||||||||||||||||| ||| || | |
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| T |
32731712 |
aaattcacttctgataaattagcacgagtccaatctgacaccatacaagttcttccggttgtaaataaacatcgttccttaataaccatacaatctgcta |
32731613 |
T |
|
| Q |
108 |
cagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgac |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||| | ||| | ||||||||||||| | ||| |||||||| |
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| T |
32731612 |
aagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgac |
32731513 |
T |
|
| Q |
208 |
ggccgctgggtaagcaaaacagttaccgtaatatccaa |
245 |
Q |
| |
|
||||| | | |||||| ||| |||||||||||||||| |
|
|
| T |
32731512 |
agccgccgagaaagcaatacaattaccgtaatatccaa |
32731475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 20519723 - 20519638
Alignment:
| Q |
6 |
caaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaata |
91 |
Q |
| |
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|||||||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||||||| |||||| |||||||||||| |
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| T |
20519723 |
caaaattcacttctctgaacttagcacgtgtcaaatctgacataacacaacaacttacagttgtaagtaaacatcgttccttaata |
20519638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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