View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4499-Insertion-13 (Length: 181)
Name: NF4499-Insertion-13
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-13 |
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| [»] scaffold0045 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] scaffold0479 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 26837 - 26650
Alignment:
| Q |
7 |
acaagtgtcttcatgcatgtgaggca-ctttggcttgctcaa--gataaa-gtgatctgcatagctagagtttt---gtgagaaa-tagtgagc--attt |
96 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||| |||||||| |||||||| |||| |
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| T |
26837 |
acaagtgtcttcatgcatgtgaggcaactttggcttgctcaaaagataaaagtgatccgcatagctagagtttttttgtgagaaaatagtgagccaattt |
26738 |
T |
|
| Q |
97 |
gtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
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|||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26737 |
gtgagagtgttccttacaaattgagagataaattgtagtgagatcc-acctaagggtggagtagttgtattctcgttatcattagagtg |
26650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 41481543 - 41481650
Alignment:
| Q |
79 |
gagaaatagtgagc--atttgtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatc |
172 |
Q |
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|||||||||||||| |||||||||||||| | |||| |||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||| |
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| T |
41481543 |
gagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatcc-acctaagggtgaagttgttgtattcccattatc |
41481641 |
T |
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| Q |
173 |
attagagtg |
181 |
Q |
| |
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|||| |||| |
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| T |
41481642 |
attatagtg |
41481650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 36167542 - 36167649
Alignment:
| Q |
79 |
gagaaatagtgagc--atttgtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatc |
172 |
Q |
| |
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|||||||||||||| |||||||||||||| | |||| |||||||||| ||| ||||||||||| ||||||||||| ||| ||||||||| | ||||| |
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| T |
36167542 |
gagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatcc-acctaagggtgaagttgttgtattcccattatc |
36167640 |
T |
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| Q |
173 |
attagagtg |
181 |
Q |
| |
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|||| |||| |
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| T |
36167641 |
attatagtg |
36167649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 18951353 - 18951285
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||| ||| ||||||||| | ||||||||| |||| |
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| T |
18951353 |
attgagagataaattatagtgagatca-acctaagggtgaagttgttgtattcccattatcattatagtg |
18951285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 54967482 - 54967375
Alignment:
| Q |
79 |
gagaaatagtgagc--atttgtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatc |
172 |
Q |
| |
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|||||||||||||| |||||||||||||| | |||| |||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||| |
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| T |
54967482 |
gagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatcc-acctaagggtgaagttgttgtattcccattatc |
54967384 |
T |
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| Q |
173 |
attagagtg |
181 |
Q |
| |
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|||| |||| |
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| T |
54967383 |
attatagtg |
54967375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 39298731 - 39298837
Alignment:
| Q |
79 |
gagaaatagtgagc--atttgtgagagtgtcat---acattgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatca |
173 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | | ||||||||||| |||||||| |||||| ||||||||||| ||| ||||||||| | |||||| |
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| T |
39298731 |
gagaaatagtgagccaatttgtgagagtgtccttacaaattgagagatatattgtagttagatcc-acctaagggtgaagttgttgtattccctttatca |
39298829 |
T |
|
| Q |
174 |
ttagagtg |
181 |
Q |
| |
|
||| |||| |
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|
| T |
39298830 |
ttatagtg |
39298837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 44782757 - 44782689
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||||||| |||| |
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| T |
44782757 |
attgagagatatattgtagtgagatcc-acctaagggtgaagttgttgtattcccattatcattatagtg |
44782689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 54980075 - 54980007
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||||||| |||| |
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| T |
54980075 |
attgagagatatattgtagtgagatcc-acctaagggtgaagttgttgtattcccattatcattatagtg |
54980007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 54967646 - 54967607
Alignment:
| Q |
7 |
acaagtgtcttcatgcatgtgaggc-actttggcttgctc |
45 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |
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| T |
54967646 |
acaagtgtcttcatgcatgtaaggcaactttggcttgctc |
54967607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 54980278 - 54980239
Alignment:
| Q |
7 |
acaagtgtcttcatgcatgtgaggc-actttggcttgctc |
45 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
54980278 |
acaagtgtcttcatgcatgtaaggcaactttggcttgctc |
54980239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 2703 - 2771
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||||||| |||| |
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|
| T |
2703 |
attgagagatatattgtagtgagatcc-acctaagggtgaagttgttgtattcccattatcattatagtg |
2771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 2501 - 2540
Alignment:
| Q |
7 |
acaagtgtcttcatgcatgtgaggc-actttggcttgctc |
45 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||| |
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| T |
2501 |
acaagtgtcttcatgcatgtaaggcaactttggcttgctc |
2540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 9757491 - 9757378
Alignment:
| Q |
73 |
ttttgtgagaaatagtgagc--atttgtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctc |
166 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| | |||| |||||||||| ||| ||||||||||| ||||||||||| ||| ||||||||| | |
|
|
| T |
9757491 |
ttttgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatcc-acctaagggtgaagttgttgtattccc |
9757393 |
T |
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| Q |
167 |
gttatcattagagtg |
181 |
Q |
| |
|
||||||||| |||| |
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|
| T |
9757392 |
attatcattatagtg |
9757378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 42683064 - 42682996
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||| ||| ||||||||| | ||||||||| |||| |
|
|
| T |
42683064 |
attgagagatatattgtagtgagatgc-acctaagggtgaagttgttgtattcccattatcattatagtg |
42682996 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 4835845 - 4835738
Alignment:
| Q |
79 |
gagaaatagtgagc--atttgtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatc |
172 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||| |||||||||| ||||||||||||| ||||||||||||| ||| |||| |||| | ||||| |
|
|
| T |
4835845 |
gagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagat-ccacctaagggtgaagttgttgcattcccattatc |
4835747 |
T |
|
| Q |
173 |
attagagtg |
181 |
Q |
| |
|
|||| |||| |
|
|
| T |
4835746 |
attatagtg |
4835738 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 4842881 - 4842813
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||| ||||||||| |||| |
|
|
| T |
4842881 |
attgagagatatattgtagtgagat-ccacctaagggtgaagttgttgtattcctattatcattatagtg |
4842813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 25857400 - 25857293
Alignment:
| Q |
79 |
gagaaatagtgagc--atttgtgagagtgt--cataca--ttgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatc |
172 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||| || ||||||| ||||||||||||| |||||||| |||| ||| ||||||||| | ||||| |
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|
| T |
25857400 |
gagaaatagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagat-ccacctaaaggtgaagttgttgtattcccattatc |
25857302 |
T |
|
| Q |
173 |
attagagtg |
181 |
Q |
| |
|
|||| |||| |
|
|
| T |
25857301 |
attatagtg |
25857293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 13465189 - 13465121
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||| | | ||||||||| | ||||||||| |||| |
|
|
| T |
13465189 |
attgagagatacattgtagtgagat-ccacctgagggtgaacttgttgtattcccattatcattatagtg |
13465121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 17845821 - 17845889
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| ||| |||||||| | ||||||||| |||| |
|
|
| T |
17845821 |
attgagagatatattgtagtgagat-tcacctaagggtgaagttgttgtatttccattatcattatagtg |
17845889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 24379511 - 24379443
Alignment:
| Q |
112 |
attgagagataaattgtagtgagatcccacctaagggtggagtagttgtattctcgttatcattagagtg |
181 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||| ||| ||||||||| ||||||||| |||| |
|
|
| T |
24379511 |
attgagagatatattgtagggagatcc-acctaagggtgaagttgttgtattcctattatcattatagtg |
24379443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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