View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499-Insertion-14 (Length: 165)
Name: NF4499-Insertion-14
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 1e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 10662156 - 10662314
Alignment:
| Q |
7 |
agatcagagcaacttgacaagtttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtg |
106 |
Q |
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| T |
10662156 |
agatcagagcaacttgacaagtttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtg |
10662255 |
T |
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| Q |
107 |
ggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaatgagagattg |
165 |
Q |
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| T |
10662256 |
ggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaaagagagattg |
10662314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 7191140 - 7190982
Alignment:
| Q |
7 |
agatcagagcaacttgacaagtttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtg |
106 |
Q |
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| T |
7191140 |
agattagagcaactcgtcaagtttgtaggaatctcccctgtcaaggagttatcaatgagtacgagttcctgcaatcgaaacaactgaccgagtttctgtg |
7191041 |
T |
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| Q |
107 |
ggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaatgagagattg |
165 |
Q |
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| T |
7191040 |
ggatttttccgaagaaactattgtgtgcaaggttgaggtttctcaaaaaagagagattg |
7190982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 10654273 - 10654431
Alignment:
| Q |
7 |
agatcagagcaacttgacaagtttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtg |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||| || | | ||||| ||||||||| |||| ||||||||||||| | |
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| T |
10654273 |
agatcagagcaacttgtcaagtttgtaggaatctcccctgtcattgagttattggagagaacgagttgctgcaatcgtgacaactgaccgagttcatgag |
10654372 |
T |
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| Q |
107 |
ggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaatgagagattg |
165 |
Q |
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| T |
10654373 |
ggatatttccaaagaaactattttttgcaaggatgaggtttgtcaaaaaagagagattg |
10654431 |
T |
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