View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499-Insertion-2 (Length: 1071)
Name: NF4499-Insertion-2
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-2 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 525 - 1071
Target Start/End: Original strand, 15179596 - 15180146
Alignment:
| Q |
525 |
ctaccacagaaaaagagcccctccttcaatttcattaccaattttatgtagaatgtttcttcttagttgcctcaggtatgtacaaatcaaccaccaagtt |
624 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
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| T |
15179596 |
ctaccacagaaaaagagcccctccttcaatttcatcatcaattttatgtagaatgtttcttcttagttgcctcaggtatgtacaaatctatcaccaaatt |
15179695 |
T |
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| Q |
625 |
aaatagcatagtatatgttttttagacggagaaatgttagtaatcggttgttatattagtattttctccttcatctgatcctctgactcgatacgagtca |
724 |
Q |
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||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15179696 |
aaatagcatggtatatgttttttagacagataaatgttagtaatcggttgttatattagtattttctccttcatctgatcctttgactcgatacgagtca |
15179795 |
T |
|
| Q |
725 |
aagaaaatattattgtatggatatgaatttagttgtagataaggaaatttatgtggaaaatttgattgtttgattgatcttgagctacctacctgtgcag |
824 |
Q |
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| T |
15179796 |
aagaaaatattattgtatggatatgaatttagttgtagagaagggaatttatgtggaaaatttgattgtttgattgatcttgagctacctacctgtgcag |
15179895 |
T |
|
| Q |
825 |
tactgcagtgcagattttaacgaatactggaattgaatgtagctctcccacactagcatctgctatgcttgaccttctcccagcttttaccttcatactt |
924 |
Q |
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| T |
15179896 |
tactgcagtgcagattttaacgaatactggaattgaatgtagctctcccacactagcatctgctatgcttgaccttctccctgcttttaccttcatactt |
15179995 |
T |
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| Q |
925 |
gctttaatttcaaggtttgacttattttatttatcttctatttacgtgtaatttacgatttgtgaaattttaaagttataccc-agtcatagatg-tagt |
1022 |
Q |
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| T |
15179996 |
gctttaatttcaaggtttgacttattttatttatcttctatttacgtgtaatttacgagttgtgaaattttgaagttatacccaagtcatagatgttagt |
15180095 |
T |
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| Q |
1023 |
ggaagatct-accataacggatgtggcaattgtatttggt-aagtctttca |
1071 |
Q |
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| T |
15180096 |
ggaaggtctaaccatatcggatgtggcaattgtatttggtaaagtctttca |
15180146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 100 - 460
Target Start/End: Original strand, 15179166 - 15179531
Alignment:
| Q |
100 |
tatcttcttggaagaataataaa-gtctttctcccctccactatgttttgtagttggtgacaaaaaatatttagtaaccccacacatgtacctttgcaaa |
198 |
Q |
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| T |
15179166 |
tatcttcttggaagaataataaaagtctttctcccctccactatgttttgtagttggtgacaaaaaatatttagtgaccccacacatgtacctttgcaaa |
15179265 |
T |
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| Q |
199 |
atgataagtannnnnnnnnnctctaacacctagcactttgtcacaggaaaatgaaaattaaaggacaata------ttaaactcaaagataaagaaaaca |
292 |
Q |
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| T |
15179266 |
atgattattatttttttt--cactaacacctagcactttgtcaaaggaaaatgaaaattaaaggacaatacaattattaaactcaaagataaagaaaaca |
15179363 |
T |
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| Q |
293 |
cattattgtactgagagttagaacaaggaaattggaggaagaacagtgtctgaagaagaaaaatggtgatcgaaggagcaagtgtaacagcaacaatggt |
392 |
Q |
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| T |
15179364 |
cattattgtactgagagttagaacaaggaaattggaggaagaacagtgtctgaagaagaaaaatggtgatcgaaggagcaagtgtaacagcaacaatggt |
15179463 |
T |
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| Q |
393 |
tgcagttcaattcctagaagtgggtggtaacactctgatcaaagcagccaccaatgatggaatgagta |
460 |
Q |
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| T |
15179464 |
tgcagttcaattcctagaagtgggtggtaacactctgatcaaagcagccaccaatgatggaatgagta |
15179531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 818 - 941
Target Start/End: Original strand, 15189565 - 15189688
Alignment:
| Q |
818 |
tgtgcagtactgcagtgcagattttaacgaatactggaattgaatgtagctctcccacactagcatctgctatgcttgaccttctcccagcttttacctt |
917 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| | |||||||||||| |||||||| |||| ||||| || || |
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| T |
15189565 |
tgtgcagtactgcagtgcagattttaatgaatactggaattggatatagctctcccacattggcatctgctatggttgaccttgtccctgctttcacgtt |
15189664 |
T |
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| Q |
918 |
catacttgctttaatttcaaggtt |
941 |
Q |
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| T |
15189665 |
catacttgctgtaatttcaaggtt |
15189688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 348 - 460
Target Start/End: Original strand, 15201072 - 15201184
Alignment:
| Q |
348 |
aagaaaaatggtgatcgaaggagcaagtgtaacagcaacaatggttgcagttcaattcctagaagtgggtggtaacactctgatcaaagcagccaccaat |
447 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||||| | ||||| || |||||||||||||| |
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| T |
15201072 |
aagaaaaatggtgagcgaaggagcaagtgtaacagcagcaatgattgcagctcaattcgtggaagtgggtggtgatactctaatgaaagcagccaccaaa |
15201171 |
T |
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| Q |
448 |
gatggaatgagta |
460 |
Q |
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||||||||||||| |
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| T |
15201172 |
gatggaatgagta |
15201184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 15178684 - 15178747
Alignment:
| Q |
27 |
aaattaatgtgttggactatgttaagtcttttgaggccacgcttcccacatgcaaacatattta |
90 |
Q |
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| T |
15178684 |
aaattaatgtgttggactatgttaagtcttttgaggccacgcttcccacatgcaaatatattta |
15178747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 366 - 460
Target Start/End: Original strand, 15208162 - 15208256
Alignment:
| Q |
366 |
aggagcaagtgtaacagcaacaatggttgcagttcaattcctagaagtgggtggtaacactctgatcaaagcagccaccaatgatggaatgagta |
460 |
Q |
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| T |
15208162 |
aggagcaagtgtaacaacaacaatgattgcagctcaaatcgttgaagtgggtggtgaaactctaatgaaatcagccactaaagatggaatgagta |
15208256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 902 - 940
Target Start/End: Original strand, 15201610 - 15201648
Alignment:
| Q |
902 |
tcccagcttttaccttcatacttgctttaatttcaaggt |
940 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
15201610 |
tccctgcttttaccttcatacttgctataatttcaaggt |
15201648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 902 - 940
Target Start/End: Original strand, 15208557 - 15208595
Alignment:
| Q |
902 |
tcccagcttttaccttcatacttgctttaatttcaaggt |
940 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
15208557 |
tccctgcttttaccttcatacttgctataatttcaaggt |
15208595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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