View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499-Insertion-4 (Length: 977)
Name: NF4499-Insertion-4
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 430 - 977
Target Start/End: Complemental strand, 8925197 - 8924656
Alignment:
| Q |
430 |
ttgaatacaagttttcaagtattagaaaaactaattgtttacactgtaattaccgcagacccaacacaaattttcattgaaaaatgttgcttacttcgac |
529 |
Q |
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| T |
8925197 |
ttgaacacaagttttcaagtattagaaaaactaattttttacactgtaattaccgcagacccaacacaaattttcattgaaaaatgttgcttacttcgac |
8925098 |
T |
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| Q |
530 |
taatttcaattttaaaattgcttctaaataacttcaattgaaacaaatgtcggatcaaatattactcaaacacatgcaacaaaaattcatcagcaaagtt |
629 |
Q |
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| T |
8925097 |
taatttcaattttaaaattgcttctaaataacttcaattgaaacaaatgtcgtatcaaatattgctcaaacacat-------aaattcatcaacaaagtt |
8925005 |
T |
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| Q |
630 |
ttgaattcaattatgagaagtaaagatgctactaaactttaactaggatcaaaaccaaccaatctttt-catagggtattatgggattcactgttgcaaa |
728 |
Q |
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| T |
8925004 |
ttgaattcaattatgagaagtaaagatgctactaaactttaactaggatcaaaaccaaccaatctttttcatagggtattatgggattcactgttgcaaa |
8924905 |
T |
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| Q |
729 |
ataactacatgagccacaaaatccaaaacaaaacccttaagccaaaactccttaaaatggcaacatggccttcaaaatggcatatgatctatagacatca |
828 |
Q |
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| T |
8924904 |
ataactacatgagccacaaaatccaaaacaaaacccttaagccaaaactccttaaaatggcaacatgaccttcaaaatggcatatgatctatagacatca |
8924805 |
T |
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| Q |
829 |
caaactagaatgataatcttaaacttcctgccaaatgattttcataagaaaagagaggtgacacaacttagttaaaggaaacttcttcaaaaactgttta |
928 |
Q |
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| T |
8924804 |
caaactagaatgataatcttaaacttcctgccaaatgattttcataagaaaagagaggtgacacaacttagttaaaggaaacttcttcaaaaactgttta |
8924705 |
T |
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| Q |
929 |
aatctagggcatcatatgaaccaagtaaatctaatattcatcatcagta |
977 |
Q |
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| T |
8924704 |
aatctagggcatcatatgaaccaagtaaatctaatattcatcatcagta |
8924656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 8925329 - 8925198
Alignment:
| Q |
323 |
attattagtaaaatgtatttccctccatcctctttcaacgctcaaacaatcctacttagaccaatttgaagtttcactnnnnnnnnngttgtttacaaag |
422 |
Q |
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| T |
8925329 |
attattagtaaaatgtctttccctccatcctctttcaacgctcaaacaatcctacttagaccaatttgaagtttcact-aaaaaaaagttgtttacaaag |
8925231 |
T |
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| Q |
423 |
gaataatttgaatacaagttttcaagtattaga |
455 |
Q |
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| T |
8925230 |
gaataatttgaatacaagttttcaagtattaga |
8925198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 8925579 - 8925484
Alignment:
| Q |
8 |
taaaaagcctctccttattgatcttgtgaacttttttctggtttgaatacctaataattgtgactttttaattttcactacatcgttgttactgaa |
103 |
Q |
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| T |
8925579 |
taaaaagcctctccttattgatcttgtgaactttcttctggtctgaataccaaataattttaactttttaattttcactacatcgttgctactgaa |
8925484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 8925467 - 8925418
Alignment:
| Q |
180 |
tctcccacgatttaagatcttctaatcctatgaaaccaaggcttgtagtt |
229 |
Q |
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| T |
8925467 |
tctccaacgatttaagatcttctaatcctgtgaaaccaagggttgtagtt |
8925418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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